Locus 8373

Sequence ID 3R_DroMel_CAF1
Location 22,332,788 – 22,332,882
Length 94
Max. P 0.550371
window13490

overview

Window 0

Location 22,332,788 – 22,332,882
Length 94
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 85.89
Mean single sequence MFE -19.67
Consensus MFE -14.82
Energy contribution -14.34
Covariance contribution -0.48
Combinations/Pair 1.17
Mean z-score -1.56
Structure conservation index 0.75
SVM decision value 0.03
SVM RNA-class probability 0.550371
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22332788 94 + 27905053
UCCUGUCACA--GCUCGAGCUGCAAAAUGUAAUUGAAAUGAUUUAUACAGUUCUUUUCUGUUUCAGUUUCAGCUUCAGCAGCAGCAGCACUA---CUAC
..((((..(.--(((.((((((.(((.((.(((.((((.((..........)).)))).))).)).))))))))).))).)..)))).....---.... ( -20.70)
>DroSec_CAF1 49547 91 + 1
UCCUGUCACA--GCUCGAGCUGCAAAAUGUAAUUGAAAUUAUUUAUACAGUUCUUUUCUGUUUCAGUUUCAGCUUCAGCAGGAG---CACCA---CCAC
((((((...(--(((.((((((......(((((....)))))....((((.......))))..)))))).))))...)))))).---.....---.... ( -20.70)
>DroSim_CAF1 48558 94 + 1
UCCUGUCACA--GCUCGAGCUGCAAAAUGUAAUUGAAAUGAUUUAUACAGUUCUUUUCUGUUUCAGUUUCAGCUUCAGCAGCAGCAGCACCA---CCAC
..((((..(.--(((.((((((.(((.((.(((.((((.((..........)).)))).))).)).))))))))).))).)..)))).....---.... ( -20.70)
>DroYak_CAF1 50860 97 + 1
UCCUGUCACA--GCUCGAGCUGCAAAAUGUAAUUGAAAUGAUUUAUACAGUUCUUUUCUGUUUCAGUUUCAGCUUCAGUUUCAGUAGUACCAACACCAG
...((..((.--(((.((((((.((..((.(((((((((((...............)).))))))))).))..)))))))).))).))..))....... ( -18.06)
>DroAna_CAF1 52871 84 + 1
UCCUGUCACAGAGCUCGAGCAGCAAAAUGUAAUUGAAAUGAUUUAUACAGUUCUUUUCUGUUUCUGUUUUUGUUUCAGUUACAG---------------
............(((.....)))....(((((((((((..(.....((((..(......)...))))..)..))))))))))).--------------- ( -18.20)
>consensus
UCCUGUCACA__GCUCGAGCUGCAAAAUGUAAUUGAAAUGAUUUAUACAGUUCUUUUCUGUUUCAGUUUCAGCUUCAGCAGCAG_AGCACCA___CCAC
............(((.((((((.(((.((.(((.((((.((..........)).)))).))).)).))))))))).))).................... (-14.82 = -14.34 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:58 2006