Locus 8371

Sequence ID 3R_DroMel_CAF1
Location 22,330,482 – 22,330,584
Length 102
Max. P 0.806371
window13487

overview

Window 7

Location 22,330,482 – 22,330,584
Length 102
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 86.89
Mean single sequence MFE -32.34
Consensus MFE -23.73
Energy contribution -23.65
Covariance contribution -0.08
Combinations/Pair 1.08
Mean z-score -2.02
Structure conservation index 0.73
SVM decision value 0.63
SVM RNA-class probability 0.806371
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22330482 102 - 27905053
GUUCGGUGCGUUU------------CGGUUUCGGUUCGCUUUGGUUUUGUUUUUUUUUUUUUUUGGCCGGAGGCCGGAAGAAGGAGUCGUCGCAUUGACGCUGAUUACGCAAAA
......(((((.(------------((((.(((((..((..(((.........(((((((((((((((...))))))))))))))))))..))))))).)))))..)))))... ( -30.70)
>DroSec_CAF1 47347 98 - 1
GUUCGGUGCGUUU------------CGGUUUCGGUUCGCUUUGGUUU----CUUUUUUUUUUUUGGCCGGAGGCCGGAAGAAGGAGUCGUCGCAUUGACGCUGAUUACGCAAAA
......(((((.(------------((((.(((((..((..((..((----(((((((.....(((((...))))))))))))))..))..))))))).)))))..)))))... ( -33.50)
>DroSim_CAF1 46335 98 - 1
GUUCGGUGCGUUU------------CGGUUUCGGUUCGCUUUGGUUU----CUUUUUUUUUUUUGGCCGGAGGCCGGAAGAAGGAGUCGUCGCAUUGACGCUGAUUACGCAAAA
......(((((.(------------((((.(((((..((..((..((----(((((((.....(((((...))))))))))))))..))..))))))).)))))..)))))... ( -33.50)
>DroEre_CAF1 49306 88 - 1
GUUCGGUGCGUUU------------CGGUUUCGGUUCGCUUUGGU-----------UU---UUUGGCCAGAGGCCGGAAGAAGGAGUCGUCGCAUUGAUGCUGAUUACGCAAAA
......(((((.(------------((((.(((((.((((((..(-----------((---(((((((...)))))))))).)))).))....))))).)))))..)))))... ( -31.30)
>DroYak_CAF1 48540 103 - 1
GUUCGGUGCGUUUCGGAUUCGGUUUCGGUUUCGGUUUGCUUUGGU-----------UUUUUUUUGGCCAGAGGCCGGAAGAAGGAGUCGUCGCAUUGAUGCUGAUUACGCAAAA
..((((((((...((..(((..((((((((((((....)).((((-----------(.......)))))))))))))))...)))..)).))))))))(((.......)))... ( -32.70)
>consensus
GUUCGGUGCGUUU____________CGGUUUCGGUUCGCUUUGGUUU_____UUUUUUUUUUUUGGCCGGAGGCCGGAAGAAGGAGUCGUCGCAUUGACGCUGAUUACGCAAAA
......(((((.................(((((((...((((((((..................))))))))))))))).....((.((((.....))))))....)))))... (-23.73 = -23.65 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:54 2006