| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,326,438 – 22,326,541 |
| Length | 103 |
| Max. P | 0.687820 |
| Location | 22,326,438 – 22,326,541 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 74.51 |
| Mean single sequence MFE | -28.58 |
| Consensus MFE | -14.91 |
| Energy contribution | -14.50 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.687820 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22326438 103 - 27905053 ---------GCGU--GAUGCUGAUGUUUGC-CGGCAAUGUUGUUGCAGUUGUCGAAGCUGAAGUGCAAUUUUAAUGCAAACAAUUGAAGCUGAAGCGUGCAGAGCGCACGCAA-GU ---------((((--(.((((..(((.(((-((((...((((((.(((((.....)))))...((((.......))))))))))....))))..))).))).)))))))))..-.. ( -34.50) >DroVir_CAF1 44125 92 - 1 -----------------------CGACUGC-UUUUUUAGCUGCUGCAGCUAUCGAAGUUGAAGUGCAAUUUUAAUGCAAACAAUUGAAGUUGAAGCGUGCAGAACGCAUAAAACGU -----------------------..(((((-(((..((((((...))))))..)))))...))).((((((((((.......))))))))))..((((.....))))......... ( -23.80) >DroGri_CAF1 42921 92 - 1 -----------------------CGACUGC-CUUUUCAGCUGCUGAAGUUAUCGAAGCUGAAGUGCAAUUUUAAUGCAAACAAUUGAGGUUGAAGCGUGCAUAACGCAUACAACAU -----------------------....(((-..((((((((..(((.....))).)))))))).)))..((((((.......))))))((((..((((.....))))...)))).. ( -23.10) >DroYak_CAF1 44290 112 - 1 CGAAAUGCGGCGA--GAUGCUGCUGUUUGC-CGGCAAUGUUGUUGCAGUUGUCGAAGUUGAAGUGCAAUUUUAAUGCAAACAAUUGAAGCUGAAGCGUGCAGAGCGCACGCAA-GU ......(((((..--...)))))(((((((-(((((((((....))).))))))..((((((((...)))))))))))))))......(((...((((((.....)))))).)-)) ( -36.40) >DroMoj_CAF1 45591 93 - 1 -----------------------CGACUGCAUUUUCUAGCCGCUGCAGUUAUCGAAGUUGAAGUGCAAUUUUAAUGCAAACAAUUGAAGUUGAAGCGUGCAGAACGCAUAAAGCGU -----------------------...((((((........((((.((..(.....)..)).))))((((((((((.......))))))))))....)))))).((((.....)))) ( -21.40) >DroAna_CAF1 44851 105 - 1 ---------GCUUUAGCUGUUACUGUUUGC-CGGCAAUGUUGUUGCAGUUGUCGAAGUUGAAGUGCAAUUUUAAUGCAAACAAUUGAAGGUGAAGCGUGUAGAGCGCACGCAA-GU ---------((((((.((.....(((((((-(((((((((....))).))))))..((((((((...))))))))))))))).....)).))))))(((.....)))((....-)) ( -32.30) >consensus _______________________CGACUGC_CGGCAAAGCUGCUGCAGUUAUCGAAGUUGAAGUGCAAUUUUAAUGCAAACAAUUGAAGUUGAAGCGUGCAGAACGCACACAA_GU .........................................(((.(((((.((((..(((...((((.......))))..)))))))))))).)))((((.....))))....... (-14.91 = -14.50 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:53 2006