Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,321,063 – 22,321,163 |
Length | 100 |
Max. P | 0.890537 |
Location | 22,321,063 – 22,321,163 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 92.71 |
Mean single sequence MFE | -17.17 |
Consensus MFE | -14.87 |
Energy contribution | -14.57 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.18 |
Mean z-score | -1.43 |
Structure conservation index | 0.87 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594781 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22321063 100 + 27905053 AAUAACAUUUCAUUUAGUUGGCG-GGGUAUUUGCUUAAAAAUGUGCAGAGCGAGCAAAUAUUAUACGAAAAACUAAAUAAAAAUUAAUUGAAUUAAGCGAU .......(((.((((((((..((-.(((((((((((...............)))))))))))...))...)))))))).)))................... ( -18.86) >DroVir_CAF1 39260 100 + 1 AAUAACAUUUCAUUUAGUUGGCUGGGAUAUUUGCUUAAAAAUGUGCAGUGCGAGCAAAUAUUAAACGAA-AACUAAAUAAAAAUUAAUUGAAUUAAGCGUA .......(((.((((((((..(...(((((((((((...............)))))))))))....)..-)))))))).)))................... ( -16.96) >DroGri_CAF1 36812 100 + 1 AAUAACAUUUCAUUUAGUGGGCUGGUAUAUUUGCUCAAAAUUGUGCAGAGCGAGCAAAUAUUAAACAAA-AACUAAAUAAAAAUUAAUUGAAUUAAGCGAC .......(((.(((((((....((..((((((((((...............))))))))))....))..-.))))))).)))................... ( -16.26) >DroSec_CAF1 37873 100 + 1 AAUAACAUUUCAUUUAGUUGGCG-GGGUAUUUGCUUAAAAAUGUGCAGAGCGAGCAAAUGUUAUACGAAAAACUAAAUAAAAAUUAAUUGAAUUAAGCGAU .......(((.((((((((..((-.(((((((((((...............)))))))))))...))...)))))))).)))................... ( -15.86) >DroEre_CAF1 39125 100 + 1 AAUAACAUUUCAUUUAGUUGGCG-GGGUAUUUGCUUAAAAAUGUGCAGAGCGAGCAAAUAUUAUAUGAAAAACUAAAUAAAAAUUAAUUGAAUUAAGCGAU .......(((.((((((((..((-.(((((((((((...............)))))))))))...))...)))))))).)))................... ( -17.16) >DroMoj_CAF1 39994 100 + 1 AAUAACAUUUCAUUUAGUUGGCUGGAAUAUUUGCUUAAAAAUGUGCAGAGUGAGCAAAUAUUAAACGAA-AACUAAAUAAAAAUUAAUUGAAUUAAGCGAC .......(((.((((((((..(...((((((((((((....(....)...))))))))))))....)..-)))))))).)))................... ( -17.90) >consensus AAUAACAUUUCAUUUAGUUGGCG_GGAUAUUUGCUUAAAAAUGUGCAGAGCGAGCAAAUAUUAAACGAA_AACUAAAUAAAAAUUAAUUGAAUUAAGCGAU .......(((.((((((((......(((((((((((...............)))))))))))........)))))))).)))................... (-14.87 = -14.57 + -0.30)
Location | 22,321,063 – 22,321,163 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 92.71 |
Mean single sequence MFE | -15.53 |
Consensus MFE | -13.23 |
Energy contribution | -13.57 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.08 |
Structure conservation index | 0.85 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890537 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22321063 100 - 27905053 AUCGCUUAAUUCAAUUAAUUUUUAUUUAGUUUUUCGUAUAAUAUUUGCUCGCUCUGCACAUUUUUAAGCAAAUACCC-CGCCAACUAAAUGAAAUGUUAUU ...............((((((((((((((((...((.....((((((((.................))))))))...-))..)))))))))))).)))).. ( -14.53) >DroVir_CAF1 39260 100 - 1 UACGCUUAAUUCAAUUAAUUUUUAUUUAGUU-UUCGUUUAAUAUUUGCUCGCACUGCACAUUUUUAAGCAAAUAUCCCAGCCAACUAAAUGAAAUGUUAUU ...............((((((((((((((((-...(((..(((((((((.................)))))))))...))).)))))))))))).)))).. ( -16.23) >DroGri_CAF1 36812 100 - 1 GUCGCUUAAUUCAAUUAAUUUUUAUUUAGUU-UUUGUUUAAUAUUUGCUCGCUCUGCACAAUUUUGAGCAAAUAUACCAGCCCACUAAAUGAAAUGUUAUU ...............(((((((((((((((.-...(((..(((((((((((.............)))))))))))...)))..))))))))))).)))).. ( -19.12) >DroSec_CAF1 37873 100 - 1 AUCGCUUAAUUCAAUUAAUUUUUAUUUAGUUUUUCGUAUAACAUUUGCUCGCUCUGCACAUUUUUAAGCAAAUACCC-CGCCAACUAAAUGAAAUGUUAUU ...............((((((((((((((((...((......(((((((.................)))))))....-))..)))))))))))).)))).. ( -13.03) >DroEre_CAF1 39125 100 - 1 AUCGCUUAAUUCAAUUAAUUUUUAUUUAGUUUUUCAUAUAAUAUUUGCUCGCUCUGCACAUUUUUAAGCAAAUACCC-CGCCAACUAAAUGAAAUGUUAUU ...............((((((((((((((((..........((((((((.................))))))))...-....)))))))))))).)))).. ( -13.16) >DroMoj_CAF1 39994 100 - 1 GUCGCUUAAUUCAAUUAAUUUUUAUUUAGUU-UUCGUUUAAUAUUUGCUCACUCUGCACAUUUUUAAGCAAAUAUUCCAGCCAACUAAAUGAAAUGUUAUU ...............((((((((((((((((-...(((.((((((((((.................))))))))))..))).)))))))))))).)))).. ( -17.13) >consensus AUCGCUUAAUUCAAUUAAUUUUUAUUUAGUU_UUCGUAUAAUAUUUGCUCGCUCUGCACAUUUUUAAGCAAAUACCC_AGCCAACUAAAUGAAAUGUUAUU ...............((((((((((((((((..........((((((((.................))))))))........)))))))))))).)))).. (-13.23 = -13.57 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:49 2006