| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,319,254 – 22,319,346 |
| Length | 92 |
| Max. P | 0.741555 |
| Location | 22,319,254 – 22,319,346 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 96.77 |
| Mean single sequence MFE | -28.35 |
| Consensus MFE | -24.65 |
| Energy contribution | -24.90 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.741555 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22319254 92 + 27905053 UGCCCG--UACGUAUAUAUGGUAUCUAUCCACCUAUCUCUGGCAUGUGGGAGAAGCCUUCACACAUUCCGGAGUCCAGUCCGGAGCCCCAUUUU .(((((--.((........(((........)))...((((((.(((((((((....)))).))))).))))))....)).))).))........ ( -27.90) >DroSec_CAF1 36072 92 + 1 UGCCCG--UACGUAUAUAUGGUAUCUAUCCACCUAUCUCUGGCAUAUGGGAGAAGCCUUCACACAUGCCGGAGUCCAGUCCGGAGCCCCGUUUU .(((((--.((........(((........)))...(((((((((.((((((....)))).)).)))))))))....)).))).))........ ( -28.50) >DroEre_CAF1 37323 94 + 1 UGCCCGUGUACGUAUAUAUGGUAUCUAUCCACCUAUCUCUGGCAUAUGGGAGAAGCCUUCACACAUGCCGGAGUCCAGUCCGGAGCCCCAUUUU .(((((((((....)))))))......(((..((..(((((((((.((((((....)))).)).)))))))))...))...)))))........ ( -28.20) >DroYak_CAF1 36878 92 + 1 UGCCCG--UACGUAUAUACGGUAUCUAUCCACCUAUCUCUGGCAUAUGGGAGAAGCCUUCACACAUGCCGGAGUCCAGUCCGGAGCCCCAUUUU .(((((--.((........(((........)))...(((((((((.((((((....)))).)).)))))))))....)).))).))........ ( -28.80) >consensus UGCCCG__UACGUAUAUAUGGUAUCUAUCCACCUAUCUCUGGCAUAUGGGAGAAGCCUUCACACAUGCCGGAGUCCAGUCCGGAGCCCCAUUUU .(((((...((........(((........)))...(((((((((.((((((....)))).)).)))))))))....)).))).))........ (-24.65 = -24.90 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:47 2006