Locus 8364

Sequence ID 3R_DroMel_CAF1
Location 22,317,023 – 22,317,128
Length 105
Max. P 0.977868
window13476

overview

Window 6

Location 22,317,023 – 22,317,128
Length 105
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 79.63
Mean single sequence MFE -26.78
Consensus MFE -16.38
Energy contribution -16.33
Covariance contribution -0.05
Combinations/Pair 1.15
Mean z-score -3.21
Structure conservation index 0.61
SVM decision value 1.80
SVM RNA-class probability 0.977868
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22317023 105 + 27905053
AUUGCCCUUAAAGAAAAGUAUAAUAAAAUUUCAUUUCCUUUC-AAAUGAAAUUUUGUGAGGCGUUGAAAAG----------CGCUUUUAGCUGGUUGCCGAAAAUUUUCAAACAAA
............(((((.....((((((((((((((......-))))))))))))))((((((((....))----------))))))..((.....))......)))))....... ( -24.00)
>DroSec_CAF1 33568 105 + 1
AUUGCCCUUAAAGAAAAGUAUAAUAAAAUUUCAUUUCCUUUC-AAAUGAAAUUUUGUGAGGCGUUGAAAAG----------CGCUUUUAGCUGGCUGCCGAAAAUUUUCAAACAAA
...(((................((((((((((((((......-))))))))))))))((((((((....))----------)))))).....)))..................... ( -24.70)
>DroSim_CAF1 33043 105 + 1
AUUGCCCUUAAAGAAAAGUAUAAUAAAAUUUCAUUUCCUUUC-AAAUGAAAUUUUGUGAGGCGUUGAAAAG----------CGCUUUUAGCUGGCUGCCGAAAAUUUUCGAACAAA
...(((................((((((((((((((......-))))))))))))))((((((((....))----------)))))).....)))...((((....))))...... ( -26.50)
>DroYak_CAF1 34226 104 + 1
AUUGCCCUUAAAGAAACGUAUAAUAAAAUUUCAUUUCCUUUC-AAAUGAAAUUUUGUGGAGCGUUGAAAAG----------CGCUUUUAGCUGGCUGGCGAA-AUUCUUAAACACA
.(((((.....((.........((((((((((((((......-))))))))))))))((((((((....))----------))))))...))....))))).-............. ( -26.80)
>DroMoj_CAF1 33869 102 + 1
ACUGCAAUUGCAGAAUGG--CAAUAAAAUUUUAUUUUCCACAGAAAUGAAAUUUUGUGAACCGUUGAAAAC----------CACUUGCCACACGCU--CGGCAAGCCAGCAACAAA
.((((....))))...((--..(((((((((((((((.....)))))))))))))))...))((((.....----------..((((((.......--.))))))....))))... ( -29.50)
>DroAna_CAF1 33390 112 + 1
AUUGCCUUUAAAGAAUCGUAUAAUAAAAUUUUAUUUCCUUUG-AAAUGAAAUUUUGUGAGGCGUUGAAAAAAUGCCAUUUUCAUUUUCAGCUGGCAGGCGAAAAUU---GAACGAA
...............((((...(((((((((((((((....)-))))))))))))))..((((((.....))))))....((((((((.(((....)))))))).)---)))))). ( -29.20)
>consensus
AUUGCCCUUAAAGAAAAGUAUAAUAAAAUUUCAUUUCCUUUC_AAAUGAAAUUUUGUGAGGCGUUGAAAAG__________CGCUUUUAGCUGGCUGCCGAAAAUUUUCAAACAAA
...(((...........((...((((((((((((((.......))))))))))))))...))(((((((...............))))))).)))..................... (-16.38 = -16.33 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:43 2006