Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,312,080 – 22,312,173 |
Length | 93 |
Max. P | 0.907137 |
Location | 22,312,080 – 22,312,173 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 81.70 |
Mean single sequence MFE | -22.01 |
Consensus MFE | -14.13 |
Energy contribution | -14.55 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.13 |
Mean z-score | -2.96 |
Structure conservation index | 0.64 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.907137 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22312080 93 + 27905053 UAAACUAUCAAAUAUUGACAGCUGUGCAUUCGCAAAGCUGGGGAAUCAAUGCAAUAAACACAAACAAACCCUUGUCAGUG---UGUUGACAAGCCA .......((((((((((((((((.(((....))).))))(((..........................)))..)))))))---).))))....... ( -21.47) >DroSec_CAF1 28549 89 + 1 UAAACUGUCAAAUAUUGACAGCUGUGCAUUCGCAUAGCUGGGGAAUCAAUAGAAUAAACA----CAAACCCUUGUCAGCG---UGUUGACAAGCCA ............(((((((((((((((....))))))))).....)))))).........----......((((((((..---..))))))))... ( -26.40) >DroSim_CAF1 28049 74 + 1 UAAACUGUCAAAUAUUGACAGCUGUGCAUUCACA-------------------AUAAACACAAACAAACCCUUGUCAGCG---UGUUGACAAGCCA ....((((((.....)))))).((((....))))-------------------.................((((((((..---..))))))))... ( -17.20) >DroEre_CAF1 29722 93 + 1 CAAACUGUCAAAUAUUGACAGCUGUGCAUUCGCAUAGCUGGGGAAUCAAUACAAUAAACACAAACAAACCCUUGUCAGCG---UGUUGACAAGCCA ............(((((((((((((((....))))))))).....))))))...................((((((((..---..))))))))... ( -26.10) >DroYak_CAF1 28528 93 + 1 UAAACUGUCAAAUAUUGACAGCUGUGCAUUCGCAUAGCUGGGGAAUCAAUACAAUAAACACAAAUAAACCCUUGUCAGCG---UGUUGACAAGCCA ............(((((((((((((((....))))))))).....))))))...................((((((((..---..))))))))... ( -26.10) >DroAna_CAF1 28566 81 + 1 UAAACUGUCCAAUAUUGACAGCCCU---------------GGGAAUCAAUACAAUAAACACAAACAAACCCAUGUCGGGGGGAUGUUGACAAGCCA .....((((...((((((...((..---------------.))..))))))...........((((..(((.......)))..))))))))..... ( -14.80) >consensus UAAACUGUCAAAUAUUGACAGCUGUGCAUUCGCAUAGCUGGGGAAUCAAUACAAUAAACACAAACAAACCCUUGUCAGCG___UGUUGACAAGCCA ....((((((.....)))))).................................................(((((((((.....)))))))))... (-14.13 = -14.55 + 0.42)
Location | 22,312,080 – 22,312,173 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 81.70 |
Mean single sequence MFE | -22.73 |
Consensus MFE | -14.13 |
Energy contribution | -14.35 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.13 |
Mean z-score | -1.64 |
Structure conservation index | 0.62 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507859 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22312080 93 - 27905053 UGGCUUGUCAACA---CACUGACAAGGGUUUGUUUGUGUUUAUUGCAUUGAUUCCCCAGCUUUGCGAAUGCACAGCUGUCAAUAUUUGAUAGUUUA .((((.(((((..---...((((..(((...(((.((((.....)))).)))..)))((((.(((....))).))))))))....))))))))).. ( -24.20) >DroSec_CAF1 28549 89 - 1 UGGCUUGUCAACA---CGCUGACAAGGGUUUG----UGUUUAUUCUAUUGAUUCCCCAGCUAUGCGAAUGCACAGCUGUCAAUAUUUGACAGUUUA .((((.(((((.(---(((.(((....))).)----)))......((((((.....(((((.(((....))).))))))))))).))))))))).. ( -23.10) >DroSim_CAF1 28049 74 - 1 UGGCUUGUCAACA---CGCUGACAAGGGUUUGUUUGUGUUUAU-------------------UGUGAAUGCACAGCUGUCAAUAUUUGACAGUUUA ...(((((((...---...)))))))........(((((....-------------------.......)))))(((((((.....)))))))... ( -20.00) >DroEre_CAF1 29722 93 - 1 UGGCUUGUCAACA---CGCUGACAAGGGUUUGUUUGUGUUUAUUGUAUUGAUUCCCCAGCUAUGCGAAUGCACAGCUGUCAAUAUUUGACAGUUUG .((((.(((((.(---(((.(((((....))))).)))).....(((((((.....(((((.(((....))).))))))))))))))))))))).. ( -25.50) >DroYak_CAF1 28528 93 - 1 UGGCUUGUCAACA---CGCUGACAAGGGUUUAUUUGUGUUUAUUGUAUUGAUUCCCCAGCUAUGCGAAUGCACAGCUGUCAAUAUUUGACAGUUUA ...(((((((...---...)))))))..........((((....(((((((.....(((((.(((....))).))))))))))))..))))..... ( -25.20) >DroAna_CAF1 28566 81 - 1 UGGCUUGUCAACAUCCCCCCGACAUGGGUUUGUUUGUGUUUAUUGUAUUGAUUCCC---------------AGGGCUGUCAAUAUUGGACAGUUUA .((((.(((((((..(((.......)))..))))..........((((((((..(.---------------...)..))))))))..))))))).. ( -18.40) >consensus UGGCUUGUCAACA___CGCUGACAAGGGUUUGUUUGUGUUUAUUGUAUUGAUUCCCCAGCUAUGCGAAUGCACAGCUGUCAAUAUUUGACAGUUUA ...(((((((.........)))))))...............................................((((((((.....)))))))).. (-14.13 = -14.35 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:42 2006