Locus 8360

Sequence ID 3R_DroMel_CAF1
Location 22,306,831 – 22,306,924
Length 93
Max. P 0.911289
window13468

overview

Window 8

Location 22,306,831 – 22,306,924
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 92.91
Mean single sequence MFE -20.18
Consensus MFE -18.38
Energy contribution -18.24
Covariance contribution -0.14
Combinations/Pair 1.05
Mean z-score -1.49
Structure conservation index 0.91
SVM decision value 1.08
SVM RNA-class probability 0.911289
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22306831 93 + 27905053
GACGUGCUGUUCUAAGGUUGCCCCGCGUUGUUGUAAAAUGCAAUAAUAAAAUGUGCCUGCAGCAGGAAGAUGGAGAGAGUAUGAAAAAGGAAA
..((((((.((((...(((..((.((((((((((.....))))))))....(((....))))).))..)))..)))))))))).......... ( -21.40)
>DroSec_CAF1 23234 92 + 1
GACGUGCUGUUCUAAGGUUGU-CCGCGUUGUUGUAAAAUGUAAUAAUAAAAUGUGCCUGCAGCAGGAAGAUGGAGAGAGUAUAAAAAAGGAAA
...(((((.((((...(((.(-((..(((((.(((.....((....)).....)))..))))).))).)))..)))))))))........... ( -17.00)
>DroSim_CAF1 22728 92 + 1
GACGUGCUGUUCUAAGGUUGC-CCGCGUUGUUGUAAAAUGCAAUAAUAAAAUGUGCCUGCAGCAGGAAGAUGGAGAGAGUAUGAAAAAGGAAA
..((((((.((((.......(-(.((((((((((.....))))))))....(((....))))).)).......)))))))))).......... ( -20.74)
>DroEre_CAF1 24292 88 + 1
GACGUGCUGUUCUAAGGUUGC-CCGCGUUGUUGUAAAAUGCAAUAAUAAAAUGUGCCUGCAGCAGGAAGAUGGA--GAGUAUGAAAAAAAA--
..((((((.(((....(((((-..((((((((((.....)))))))).......))..)))))........)))--.))))))........-- ( -20.81)
>DroYak_CAF1 23028 92 + 1
GACGUGCUGUUCUAAGGUUGC-CCGCGUUGUUGUAAAAUGCAAUAAUAAAAUGUGCCUGCAGCAGGAAGAUGGAAAGAGUAUGAAAAAAAAAA
..((((((.(((((......(-(.((((((((((.....))))))))....(((....))))).))....)))))..)))))).......... ( -20.50)
>DroAna_CAF1 23160 88 + 1
GACGUGCUGUUCUAAGGUUGC-CCGCGUUGUUGUAAAAUGCAAUAAUAAAAUGUGCCUGCAGCAGGAAGAUGGCAAG--UAAAAAAUAAAA--
.((.((((((..(...(((((-..((((((((((.....)))))))).......))..)))))...)..)))))).)--)...........-- ( -20.61)
>consensus
GACGUGCUGUUCUAAGGUUGC_CCGCGUUGUUGUAAAAUGCAAUAAUAAAAUGUGCCUGCAGCAGGAAGAUGGAGAGAGUAUGAAAAAAAAAA
..(.((((((....((((........((((((((.....)))))))).......)))))))))).)........................... (-18.38 = -18.24 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:36 2006