Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,870,895 – 2,871,054 |
Length | 159 |
Max. P | 0.967067 |
Location | 2,870,895 – 2,871,014 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.97 |
Mean single sequence MFE | -41.80 |
Consensus MFE | -35.66 |
Energy contribution | -34.98 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.24 |
Mean z-score | -1.75 |
Structure conservation index | 0.85 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.820995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2870895 119 - 27905053 AAAGUGGGGGAAGUGCAAAUUGUGUUGCAAAGGUGAGGCAAGAACAGAAGGCUCAGGUCGGGGUCACCCCG-AAAUUGGAUGGAUUCGGGGUUUGGUGGGAUGGUUCAUUCGCCGGCGGA ...((.((.(((.......((((.(..(....)..).))))((((....(((((......)))))((((((-((.((....)).))))))))...........)))).))).)).))... ( -37.50) >DroSec_CAF1 1872 120 - 1 AAAGUGGGGGAAGUGCAAAUUGUGUUGCGAAGGUGAGGCAAGAACAGAAGGAUCAGGUCGGGGUCACCACUUGGCUCGGAUGGAUUUCGGGCUUGCCUGGAUGGUUCAUUCGCCGGCGGA ...((.((.(((.......((((.(..(....)..).))))((((...(((..(((((.((.....)))))))(((((((.....)))))))...))).....)))).))).)).))... ( -42.00) >DroSim_CAF1 2253 120 - 1 AAAGUGGGGGAAGUGCAAAUUGUGUUGCGAAGGUGAGGCAAGAACAGAAGGAUCAGGUCGGGGUCACCACUUGGCUCGGAUGGAUUUCGGGCUUGCCUGGAUGGUUCAUUCGCCGGCGGA ...((.((.(((.......((((.(..(....)..).))))((((...(((..(((((.((.....)))))))(((((((.....)))))))...))).....)))).))).)).))... ( -42.00) >DroEre_CAF1 2811 120 - 1 AAAGUGGGGGGAGUGCAAAUUGUGUUGCGAAGGUGAAGCAAGAGCAGAAGGCUCAGGUCGGGGUCACCACUUGGCUCGGAUGAAUUCCGGGCUUGCCUCGAUGGUUUAUUCGCCGGCGGA ...((.((.(((..((...((((.(..(....)..).))))((((.....))))..((((((((........((((((((.....)))))))).)))))))).))...))).)).))... ( -45.70) >consensus AAAGUGGGGGAAGUGCAAAUUGUGUUGCGAAGGUGAGGCAAGAACAGAAGGAUCAGGUCGGGGUCACCACUUGGCUCGGAUGGAUUCCGGGCUUGCCUGGAUGGUUCAUUCGCCGGCGGA ...((.((.(((.......((((.(..(....)..).))))((((....(((((......))))).(((...((((((((.....))))))))....)))...)))).))).)).))... (-35.66 = -34.98 + -0.69)
Location | 2,870,935 – 2,871,054 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.78 |
Mean single sequence MFE | -32.77 |
Consensus MFE | -28.38 |
Energy contribution | -29.38 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.13 |
Mean z-score | -2.45 |
Structure conservation index | 0.87 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.967067 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2870935 119 - 27905053 ACCCAAAAAUAUAAGAGAAAUGGAUAAGGGAACCGAGUGCAAAGUGGGGGAAGUGCAAAUUGUGUUGCAAAGGUGAGGCAAGAACAGAAGGCUCAGGUCGGGGUCACCCCG-AAAUUGGA .(((.....(((.......))).....)))..((((........(((((...((.....((((.(..(....)..).))))..))....(((((......))))).)))))-...)))). ( -26.90) >DroSec_CAF1 1912 120 - 1 ACCCAAAAAUAUAAGAGAAAUGGAUAAGGGAACCGAGUGCAAAGUGGGGGAAGUGCAAAUUGUGUUGCGAAGGUGAGGCAAGAACAGAAGGAUCAGGUCGGGGUCACCACUUGGCUCGGA .(((.....(((.......))).....)))..((((((...((((((.....((.....((((.(..(....)..).))))..)).....((((.......)))).)))))).)))))). ( -33.90) >DroSim_CAF1 2293 120 - 1 ACCCAAAAAUAUAAGAGAAAUGGAUAAGGGAACCGAGUGCAAAGUGGGGGAAGUGCAAAUUGUGUUGCGAAGGUGAGGCAAGAACAGAAGGAUCAGGUCGGGGUCACCACUUGGCUCGGA .(((.....(((.......))).....)))..((((((...((((((.....((.....((((.(..(....)..).))))..)).....((((.......)))).)))))).)))))). ( -33.90) >DroEre_CAF1 2851 119 - 1 ACCCAAAAAUAUAAG-GAAAAGGAUAGGGGAGCCGGGUGCAAAGUGGGGGGAGUGCAAAUUGUGUUGCGAAGGUGAAGCAAGAGCAGAAGGCUCAGGUCGGGGUCACCACUUGGCUCGGA .(((...........-..........)))...((((((...((((((...((.(.(...((((.(..(....)..).))))((((.....)))).....).).)).)))))).)))))). ( -36.40) >consensus ACCCAAAAAUAUAAGAGAAAUGGAUAAGGGAACCGAGUGCAAAGUGGGGGAAGUGCAAAUUGUGUUGCGAAGGUGAGGCAAGAACAGAAGGAUCAGGUCGGGGUCACCACUUGGCUCGGA .(((.....(((.......))).....)))..((((((...((((((.....((.....((((.(..(....)..).))))..))....(((((......))))).)))))).)))))). (-28.38 = -29.38 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:18 2006