| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,304,862 – 22,304,952 |
| Length | 90 |
| Max. P | 0.558452 |
| Location | 22,304,862 – 22,304,952 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.07 |
| Mean single sequence MFE | -23.83 |
| Consensus MFE | -15.25 |
| Energy contribution | -15.25 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.558452 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22304862 90 - 27905053 ---------------------UGGCAUUUCCAUGCGUCAAAUUGCCGAC--GGGGCAUUGCGUGUAAUUACAGCAAUAAAAAUUGCAACACAUUGCGUACAAACAUGCAACAU------- ---------------------..((((....)))).......((((...--..))))((((((((...(((.(((((..............))))))))...))))))))...------- ( -21.34) >DroVir_CAF1 23147 90 - 1 ---------------------AGGAAUUUUCAUGCGUCAAAUUGCCGCA--UGUGCAUUGCGUGUAAUUACAGCAAUAAAAAUUGCAACACAUUGCGUACAAACAUGCAACAU------- ---------------------.........((((((.(.....).))))--))....((((((((...(((.(((((..............))))))))...))))))))...------- ( -21.04) >DroGri_CAF1 22026 92 - 1 ---------------------AGGAAUUUUCAUGCGUCAAAUUGCUGCCCCGGUGCAUUGCGUGUAAUUGUAGCAAUAAAAAUUGCAACACAUUGCGUACAAACAUGCAACAU------- ---------------------...........(((((.....(((.((....)))))(((..(((((((((.(((((....))))).))).))))))..)))..)))))....------- ( -21.10) >DroWil_CAF1 23957 118 - 1 GUUUCCAAACGGCGAUUCGAAAGGCAUUUCCAUGCGUCAAAUUGCCGCC--UGUGCAUUGCGUGUAAUUGUGGCAAUAAAAAUUGCAACACAUUGCGUACAAUCAUGCAACGUGCAACAA .........((((((((.((...((((....)))).)).))))))))..--((..(.(((((((..(((((((((((..............))))).))))))))))))).)..)).... ( -35.64) >DroMoj_CAF1 22395 90 - 1 ---------------------AGGAAUUUUCAUGCGUCAAAUUGCCGCA--UGUGCAUUGCGUGUAAUUACAGCAAUAAAAAUUGCUACACAUUGCGUACAAACAUGCAACAU------- ---------------------.........((((((.(.....).))))--))(((((((..((((((...((((((....))))))....))))))..))...)))))....------- ( -22.50) >DroPer_CAF1 21173 90 - 1 ---------------------AGGCAUUUCCAUGCGUCAAAUUGCCGCC--AGGGCAUUGCGUGUAAUUACAGCAAUAAAAAUUGCAACACAUUGCGUACAAACAUGCAACGC------- ---------------------..((((....)))).......((((...--..))))((((((((...(((.(((((..............))))))))...))))))))...------- ( -21.34) >consensus _____________________AGGAAUUUCCAUGCGUCAAAUUGCCGCC__UGUGCAUUGCGUGUAAUUACAGCAAUAAAAAUUGCAACACAUUGCGUACAAACAUGCAACAU_______ ................................(((((.....(((.........)))(((..((((((....(((((....))))).....))))))..)))..)))))........... (-15.25 = -15.25 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:33 2006