Locus 8357

Sequence ID 3R_DroMel_CAF1
Location 22,304,469 – 22,304,568
Length 99
Max. P 0.626159
window13464

overview

Window 4

Location 22,304,469 – 22,304,568
Length 99
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 72.13
Mean single sequence MFE -14.32
Consensus MFE -10.61
Energy contribution -10.61
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -0.79
Structure conservation index 0.74
SVM decision value 0.19
SVM RNA-class probability 0.626159
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22304469 99 + 27905053
CAAAUGCGUUGAAAUUUAUGCUAAAAAUGCAAUCAACUUGCGUUCCGCUCGACGGACAUCCUCAA------GCACCAC---CUCCC--CCCCCCC-CCCCGAAAGUCCACU
.....((((........))))....(((((((.....)))))))..(((.((.((....)))).)------)).....---.....--.......-...(....)...... ( -14.70)
>DroSec_CAF1 20904 82 + 1
CAAAUGCGUUGAAAUUUAUGCUAAAAAUGCAAUCAACUUGCGUUCCGCUCGACGGACAUCCUCAA----------------------------CC-CCCCGAAAGUCCCCU
.......(((((..............((((((.....))))))((((.....)))).....))))----------------------------).-...(....)...... ( -12.60)
>DroSim_CAF1 20377 83 + 1
CAAAUGCGUUGAAAUUUAUGCUAAAAAUGCAAUCAACUUGCGUUCCGCUCGACGGACAUCCCCAA------G---------------------CC-CCCCGAAAGUCCCCU
.....(((((((.......((....(((((((.....)))))))..)))))))((......))..------)---------------------).-...(....)...... ( -12.11)
>DroYak_CAF1 20611 97 + 1
CAAAUGCGUUGAAAUUUAUGCUAAAAAUGCAAUCAACUUGCGUUCCGCUCGACGGACAUCCUUCA------GUCCCCC---CUCCU--UCUCCUUUUUUCAAAAGCC---C
.....((.((((((.....((....(((((((.....)))))))..)).....((((........------))))...---.....--........))))))..)).---. ( -15.20)
>DroAna_CAF1 20626 95 + 1
CAAAUGCGUUGAAAUUUAUGCUAAAAAUGCAAUCAACUUGCGUUCCGCUCGACGGACGUCCUUAGUCUGAAAUCCCCCCAACUCUCAGCCACCC----------------C
....((.(((((.......((....(((((((.....)))))))..))....(((((.......)))))...............)))))))...----------------. ( -17.00)
>consensus
CAAAUGCGUUGAAAUUUAUGCUAAAAAUGCAAUCAACUUGCGUUCCGCUCGACGGACAUCCUCAA______G__CC_C___CUC_____C_CCCC_CCCCGAAAGUCC_CU
......((((((.......((....(((((((.....)))))))..))))))))......................................................... (-10.61 = -10.61 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:32 2006