| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,299,174 – 22,299,281 |
| Length | 107 |
| Max. P | 0.594229 |
| Location | 22,299,174 – 22,299,281 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 79.52 |
| Mean single sequence MFE | -46.98 |
| Consensus MFE | -27.84 |
| Energy contribution | -27.90 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.594229 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22299174 107 - 27905053 AACUGGAGGUGAUUGUACCGCCAAACUCGCUGCCAUUGGUCACCACUAUGCCUGGACUGGGUGUGGUCGGCG------GCGGCGGCAGCGGAGG---UGGAGGUGUAGGUGGCUCC ....((((.(..(((((((.(((...((((((((..(.(((.(((((((((((.....))))))))).)).)------)).).))))))))...---))).)))))))..).)))) ( -48.60) >DroSec_CAF1 15645 110 - 1 AACUGGAGGUGAUUGUGCCGCCAAACUCGCUGCCAUUGGUCACCACCAUGCCAGGACUGGGUGUGGUCGGCG------GUGGCGGAGGUGGAGGAGGAGGAGGUGUAGGUGGCUCC ....((((.(..(((..((.((...(((.(..((.((.((((((((((((((.......))))))))....)------))))).))))..)..)))..)).))..)))..).)))) ( -47.10) >DroSim_CAF1 15086 110 - 1 AACUGGAGGUGAUUGUGCCGCCAAACUCGUUGCCAUUGGUCACCACCAUGCCUGGACUGGGUGUGGUCGGCG------GUGGCGGAGGAGGAGGAGCAGGAGGUGUAGGUGGCUCC ....((((.(..(((..((.((...(((.((.((.((.(((((((((((((((.....)))))))))....)------))))).))))..)).)))..)).))..)))..).)))) ( -44.80) >DroEre_CAF1 16472 101 - 1 AGCUGGAGGUGAUUGUGCCGCCAAAUUCGCUGCCAUUGGUCACCACCAUGCCUGGACUGGGUGUGGUCGGCG------GCGGUGGCGG---------AGGUGGUGUAGGUGGCUCC ....((((.(..(((..(((((...(((((..((....(((.(((((((((((.....))))))))).)).)------))))..))))---------))))))..)))..).)))) ( -49.30) >DroYak_CAF1 15114 101 - 1 AACUGGAGGUGAUUGUGCCGCCAAAUUCGCUGCCAUUGGUCACCACCAUGCCGGGACUGGGUGUGGUCGGUG------GCGGUGGAGG---------AGCCGGUGUAGGUGGCUCC ...(((.(((......))).)))..(((((((((((((..(((..(((.(......))))..)))..)))))------))))))))((---------(((((.......))))))) ( -47.80) >DroAna_CAF1 14990 111 - 1 AGCUGGAGGUGGUGGUGCCGCCGAACUCACUACCAUUGGUCUCCACCAUGCCGGGCUUGGGCGGAGGAGGCACCGCAAGUGUCGGCAUUAAUGGGGGUGGAAGUGUCGGUG----- .(((((.(((((.....))))).....((((.((((....(((((..((((((((((...((((........)))).))).)))))))...))))))))).))))))))).----- ( -44.30) >consensus AACUGGAGGUGAUUGUGCCGCCAAACUCGCUGCCAUUGGUCACCACCAUGCCUGGACUGGGUGUGGUCGGCG______GCGGCGGAGG_GGAGG___AGGAGGUGUAGGUGGCUCC ...(((.(((......))).)))........((((((...((((((((((((.......))))))))((.((.......)).)).................))))..))))))... (-27.84 = -27.90 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:31 2006