| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,286,243 – 22,286,334 |
| Length | 91 |
| Max. P | 0.613694 |
| Location | 22,286,243 – 22,286,334 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 84.16 |
| Mean single sequence MFE | -37.70 |
| Consensus MFE | -26.21 |
| Energy contribution | -27.24 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.613694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22286243 91 - 27905053 GUUGCUGGAAUCGGAGC---UGCUGCUGCUCGAGCUGCUCGACUCCUCCACGACUGCCUCAAUUUUGCGGGAUUUUCUGCGGGAA----AUCGGAUCA--- ......(((.(((.(((---.(((........))).)))))).)))(((....((((.........))))(((((((....))))----))))))...--- ( -26.70) >DroSec_CAF1 2447 91 - 1 GUUGCUGGAGUCGGAGC---UGCUGCUGCUCGAGCUGCUCGACUCCUCAACGACUGCCUCAAUUUUGCGGGAUUUCCUGCGGUCA----GUCGGAUCA--- ((((..(((((((.(((---.(((........))).)))))))))).))))(((((((........(((((....))))))).))----)))......--- ( -40.20) >DroSim_CAF1 2133 91 - 1 GUUGCUGGAGUCGGAGC---UGCUGCUGCUCGAGCUGCUCGACUCCUCAACGACUGCCUCAAUUUUGCGGGAUUUCCUGCGGGAA----AACGGGCCA--- ((((..(((((((.(((---.(((........))).)))))))))).))))....((((...(((((((((....))))))))).----...))))..--- ( -40.40) >DroEre_CAF1 2185 91 - 1 GUUGCUGGAGUCGGAGC---UGCUGCUGCUCGAGCUGCUCGACUCCUCGACAACUGCCUCAAUCUUGCGGCAUUUCCUGCGCGAG----AUCGGGCAA--- ((((..(((((((.(((---.(((........))).)))))))))).))))...(((((..((((((((.((.....))))))))----)).))))).--- ( -42.30) >DroYak_CAF1 2161 94 - 1 GUUGCUGGAGUCGGAAC---UGCUGCUGCUCGAGCUGCUCGACUCCUCCACAACUGCCUCAAUUUUGCGCGAUUUCCUGCGCGAG----AUGGGGCAAUAA ((((..((((((((...---.((.(((.....))).))))))))))....))))(((((((.(((((((((......))))))))----)))))))).... ( -42.40) >DroAna_CAF1 2030 101 - 1 GUUGCUGGAGUCGGAGCUACUGCUGCUGCUCGAGCUACUCGACUCCUCAAUGACCGCCUCGAUUUUGCGGGAUUUUCUGCAAAAGGAUAGUAGGACAGAGU ((((..((((((((((((...((....))...)))).).))))))).))))..((..((...(((((((((....)))))))))....))..))....... ( -34.20) >consensus GUUGCUGGAGUCGGAGC___UGCUGCUGCUCGAGCUGCUCGACUCCUCAACGACUGCCUCAAUUUUGCGGGAUUUCCUGCGGGAA____AUCGGACAA___ ((((..(((((((((((....((....))....))).).))))))).))))..(((......(((((((((....))))))))).......)))....... (-26.21 = -27.24 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:28 2006