| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,284,776 – 22,284,874 |
| Length | 98 |
| Max. P | 0.636615 |
| Location | 22,284,776 – 22,284,874 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 78.04 |
| Mean single sequence MFE | -31.42 |
| Consensus MFE | -19.14 |
| Energy contribution | -19.75 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.636615 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22284776 98 - 27905053 GCUACCUUGUCCAGCUCCAGCAGCCAUAUCGCCGGCACAAUGCUGCUCAGGUAGAGGAAAACCGAGGGGCAGAACCUGCGGAC---------AAA----GGACACAA-AUGA ....((((((((.((....)).........((.((.....((((.(((.(((........)))))).))))...)).))))))---------.))----))......-.... ( -30.40) >DroVir_CAF1 969 106 - 1 UCAAUCUUAUCCAGUUCGAGUAGCCAAAUGGCCGGCACAAUGCUGCUCAGAUACAGAAAAACCGAAGGGCAGAACCUGUAUAAGAC------AGCAGAGGGGCAUCAGGAGA .........(((..........(((....)))..((.(..(((((.((..((((((.....((....))......))))))..)))------))))...).))....))).. ( -28.40) >DroPse_CAF1 809 102 - 1 UCAAUCUUGUCCAGCUCCAACAGCCAAAUGGCGGGCACAAUGCUGCUCAGGUAUAGAAACACGGAGGGGCAGAACCUGGGGAC---------AAGAGGGGGACAUAA-AAGA ....((((((((..((((....(((....)))(((((......)))))..............))))((......))...))))---------)))).(....)....-.... ( -33.50) >DroGri_CAF1 569 103 - 1 UCAAUCUUGUCCAGUUCGAGUAGCCAAAUCGCCGGCACAAUGCUGCUCAGGUAGAGAAAAACCGAGGGGCAGAACCUGCACGA---------AGAAGGGAGGCAUAAGGAUU ....((((((((.((((..((.(((........)))))..((((.(((.(((........)))))).))))))))((......---------))......)).))))))... ( -27.70) >DroYak_CAF1 690 104 - 1 GCCACCUUGUCCAGCUCCAGGAGCCAUAUCGCCGGCACAAUGCUGCUCAGGUAGAGGAACACCGAGGGGCAGAACCUGCGGAC---GGACACGAA----GGACACCA-AUGA ....((((((((..((.((((.(((........)))....((((.(((.(((........)))))).))))...)))).))..---)))))...)----))......-.... ( -34.80) >DroPer_CAF1 811 102 - 1 UCAAUCUUGUCCAGCUCCAACAGCCAAAUGGCGGGCACAAUGCUGCUCAGGUAUAGAAACACGGAGGGGCAGAACCUGGGGAC---------AAGAGGUGGACAUAA-AAGA .......((((((.(((.....(((....)))((......((((.(((..((......))...))).))))...))((....)---------).))).))))))...-.... ( -33.70) >consensus UCAAUCUUGUCCAGCUCCAGCAGCCAAAUCGCCGGCACAAUGCUGCUCAGGUAGAGAAAAACCGAGGGGCAGAACCUGCGGAC_________AAAAGGGGGACAUAA_AAGA .......(((((..........(((........)))......((((((.(((........)))...))))))...........................)))))........ (-19.14 = -19.75 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:25 2006