| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,271,318 – 22,271,408 |
| Length | 90 |
| Max. P | 0.747506 |
| Location | 22,271,318 – 22,271,408 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 71.69 |
| Mean single sequence MFE | -22.50 |
| Consensus MFE | -10.10 |
| Energy contribution | -11.74 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.747506 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22271318 90 + 27905053 GUUUAGGCCAAGCCAAGAGCGAGCUCUGGGAAUGGUCAAAGCUAUGCAACAAGUGUCAAGCAGGCCAACAACGAGCCAACAUGCUGGCAA ((((.(((((..((.((((....)))).))..))))).))))...........(((((.(((((((......).)))....)))))))). ( -29.10) >DroVir_CAF1 58474 69 + 1 GUUU----UAAGCCACGA---AUCUCUUGGAAUGGUCAAAGCUAUGCAACAAGUGCCAG---------CAACUGGGCAAGUCG-----AU ....----.......(((---....((((..(((((....)))))....))))((((..---------......))))..)))-----.. ( -13.00) >DroSec_CAF1 43976 90 + 1 GUUUAGGCCAAGUCAAGAGCGAGCUCUGGGAAUGGUCAAAGCUAUGCAACAAGUGUCAAGCAGGCCAACAACGAGCCAACAAGCUGGCAA .....(((((..((.((((....)))).))..)))))...((((.((.....((.....)).((((......).))).....)))))).. ( -24.80) >DroMoj_CAF1 52595 69 + 1 GUUU----CAAGCCACGA---UUCACUUGGAAUGGUCAAAGCUAUGCAACAAGUGCCAG---------CAACUGGCCAAGCCA-----AG ....----..........---....(((((..((((((..(((..(((.....))).))---------)...))))))..)))-----)) ( -19.40) >DroAna_CAF1 46657 77 + 1 GUUUAGGCCAAGCCAAGA--CAGCUCUUGGAAUGGUCAAAGCUAUGCAGCAAGUGUCAAGCAGGCCAACAA---GCCA--------GCAA ((((.(((((..((((((--....))))))..))))).))))..(((.((.........)).(((......---))).--------))). ( -26.20) >consensus GUUUAGGCCAAGCCAAGA___AGCUCUUGGAAUGGUCAAAGCUAUGCAACAAGUGUCAAGCAGGCCAACAACGAGCCAACACG___GCAA ((((.(((((..((((((......))))))..))))).))))...(((.....))).................................. (-10.10 = -11.74 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:21 2006