| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,270,458 – 22,270,556 |
| Length | 98 |
| Max. P | 0.670425 |
| Location | 22,270,458 – 22,270,556 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 84.85 |
| Mean single sequence MFE | -25.65 |
| Consensus MFE | -19.10 |
| Energy contribution | -20.38 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.670425 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22270458 98 - 27905053 CA---ACGACUGUCCGCAAUCAACAAAUUGCAUGCGAUUAA--AAGUAUUCGCGGCUAAUAAACGUUUGUUGAACAAACAGCAACAAGCGG--CCUCCUGAUUUU ..---..........(((((......)))))..((((.((.--...)).))))(((.......(((((((((.........))))))))))--)).......... ( -21.21) >DroSim_CAF1 44093 98 - 1 CA---GCGACUGGCCGCAAUCAACAAAUUGCAUGCGAUUAA--AAGUAUUCGCGGCUAAUAAACGUUUGUUGAACAAACAGCAACAAGCGG--CCCCCUGAUUUU ((---(.(..((((((((((......)))))..((((.((.--...)).))))))))).....(((((((((.........))))))))).--...))))..... ( -28.60) >DroEre_CAF1 53781 98 - 1 CA---GCGACUGGCCGCAAUCAACAAAUUGCAUGCGAUUAA--AAGUAUUCGCGGCUAAUAAACGUUUGUUGAACAAACAGCAACAAGCGG--CCUCCUGAUUUU ((---(.((.((((((((((......)))))..((((.((.--...)).))))))))).....(((((((((.........))))))))).--..)))))..... ( -29.70) >DroWil_CAF1 113009 89 - 1 -------GCCUGGCCACCGAAAACAAAUUGCAUGUGAUUAAAAAAGUAUUCGCGGCUAAUAAAAUGCUGUUGAACAAACAGUAGC---------UGCAGGAGUUA -------.(((((((..((((.((.....................)).)))).)))........(((((((.....)))))))..---------..))))..... ( -19.00) >DroYak_CAF1 48617 101 - 1 CAGCAGCGACUGGCCGCAAUCAACAAAUUGCAUGCGAUUAA--AAGUAUUCGCGGCUAAUAAACGUUUGUUGAACAAACAGCAACAAGCGG--CCUCCUGAUUUU (((..((...((((((((((......)))))..((((.((.--...)).))))))))).....(((((((((.........))))))))))--)...)))..... ( -30.50) >DroAna_CAF1 45610 100 - 1 CU---CCGACUGGCCACAAUCAACAAAUUGCAUGCGAUUAA--AACUAUUCGCGGCUAAUAAACGUUUGUUGAACAAACAGCAACAAGCUGUUCGCCCUGCUUUU ..---......(((.....(((((((((.((.(((((.((.--...)).)))))))........)))))))))...((((((.....)))))).)))........ ( -24.90) >consensus CA___GCGACUGGCCGCAAUCAACAAAUUGCAUGCGAUUAA__AAGUAUUCGCGGCUAAUAAACGUUUGUUGAACAAACAGCAACAAGCGG__CCUCCUGAUUUU ..........((((((((((......)))))..((((.((......)).))))))))).....(((((((((.........)))))))))............... (-19.10 = -20.38 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:20 2006