| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,268,875 – 22,268,966 |
| Length | 91 |
| Max. P | 0.988622 |
| Location | 22,268,875 – 22,268,966 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 80.63 |
| Mean single sequence MFE | -17.78 |
| Consensus MFE | -16.91 |
| Energy contribution | -16.47 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.95 |
| SVM decision value | 2.13 |
| SVM RNA-class probability | 0.988622 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22268875 91 + 27905053 CACACACACACGCGCAACUAGCUAGGCGAGCAACAACAAAGGUUAUAG-------ACUAUAGGUGACUAUGUAUAUAGUAUCGGCAACAAAGUCGAAG ..........(((((.....))...)))..............(((((.-------((.((((....)))))).)))))..(((((......))))).. ( -16.70) >DroSec_CAF1 41546 83 + 1 ---------------AACUAGCUAGCAAAGCAACAACAAAGGCUAUAGACUAUAGACUAUAGGCGACUAUGUAUAUAGUAUCGGCAACAAAGUCGAAG ---------------...(((((.................)))))...((((((.((.((((....)))))).)))))).(((((......))))).. ( -18.23) >DroSim_CAF1 42529 88 + 1 CACAC----------AACUAGCUAGCCAAGCAACAACAAAGGCUAUAGACGAUAGACUAUAGGCGACUAUGUAUAUAGUAUCGGCAACAAAGUCGAAG .....----------.(((((((.....))).(((.....(.((((((.(....).)))))).).....)))...)))).(((((......))))).. ( -18.40) >consensus CACAC__________AACUAGCUAGCCAAGCAACAACAAAGGCUAUAGAC_AUAGACUAUAGGCGACUAUGUAUAUAGUAUCGGCAACAAAGUCGAAG ................(((((((.....))).(((.....(.((((((........)))))).).....)))...)))).(((((......))))).. (-16.91 = -16.47 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:19 2006