Locus 8344

Sequence ID 3R_DroMel_CAF1
Location 22,261,859 – 22,261,950
Length 91
Max. P 0.939993
window13448

overview

Window 8

Location 22,261,859 – 22,261,950
Length 91
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 80.41
Mean single sequence MFE -21.38
Consensus MFE -17.92
Energy contribution -17.95
Covariance contribution 0.03
Combinations/Pair 1.08
Mean z-score -2.25
Structure conservation index 0.84
SVM decision value 1.31
SVM RNA-class probability 0.939993
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22261859 91 - 27905053
G---------CCC-----AUCCCCA--UCCACCCACAAAUGUUGACAAAACGCCAACGCAUUGGAGACGUUUCACAUCAGCGAUUGGUUU-UGCUCGACAUUAUGUAC
.---------...-----.......--.......(((((((((((((((..((((((((...(....)(.....)....))).)))))))-)).)))))))).))).. ( -21.90)
>DroSec_CAF1 34554 90 - 1
G---------CCCCCCUUA--------UCCACCCACAAAUGUUGACAAAACGCCAACGCAUUGGAGACGUUUCACAUCAGCGAUUGGUUU-UGCUCGACAUUAUGUAC
.---------.........--------.......(((((((((((((((..((((((((...(....)(.....)....))).)))))))-)).)))))))).))).. ( -21.90)
>DroSim_CAF1 34707 96 - 1
A---------CCCCCCUUAUCACCA--UCCACCCACAAAUGUUGACAAAACGCCAACGCAUUGGAGACGUUUCACAUCAGCGAUUGGUUU-UGCUCGACAUUAUGUAC
.---------...............--.......(((((((((((((((..((((((((...(....)(.....)....))).)))))))-)).)))))))).))).. ( -21.90)
>DroEre_CAF1 43675 77 - 1
------------------------------UCCCAUAAAUGUUGACAAAACGCCAACGCAUUGGAGACGUUUCACAUCAGCGAUUGGGUU-UGCUCGACAUUAUAUAC
------------------------------.......((((((((..((((.(((((((...(....)(.....)....))).)))))))-)..))))))))...... ( -20.60)
>DroYak_CAF1 39844 104 - 1
A--UCACCCACUCCCCAUACCACAC--CCCAUCCAUAAAUGUUGACAAAACGCCAACGCAUUGGAGACGUUUCACAUCAGCGAUUGGUUUCUGCUCGACAUUAUGUAC
.--......................--......(((((.((((((((.((.((((((((...(....)(.....)....))).))))))).)).)))))))))))... ( -19.60)
>DroAna_CAF1 36223 104 - 1
CUGGCAC-CACCACCCU-GGCACCACCCCCUCCCAUAAAUGUUGACAAAACGCCAACGCAUC-GAGACGUUUCACAUCAGCGAUUGGUUU-UGCUCGACAUUAUAUAC
.(((..(-((......)-))..)))............((((((((((((..((((((((...-................))).)))))))-)).))))))))...... ( -22.41)
>consensus
A_________CCCCCCU_A_CACCA__UCCACCCACAAAUGUUGACAAAACGCCAACGCAUUGGAGACGUUUCACAUCAGCGAUUGGUUU_UGCUCGACAUUAUGUAC
..................................(((((((((((((....((((((((..(((((....))).))...))).)))))...)).)))))))).))).. (-17.92 = -17.95 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:17 2006