| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,258,899 – 22,259,000 |
| Length | 101 |
| Max. P | 0.521193 |
| Location | 22,258,899 – 22,259,000 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 68.86 |
| Mean single sequence MFE | -21.07 |
| Consensus MFE | -16.75 |
| Energy contribution | -16.53 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.60 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.521193 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22258899 101 + 27905053 ----------------AUUAUAAUUAUUUUAAAAGUGUCCAUUCUUACCUGUCCUCGAUGAAAUUCCGACCAAGAUCACAGCUUUUGGCCCAGUGUACUUGGCCUGGGUUAGCAGUU ----------------..................(((.....((((....(((...((......)).))).)))).)))((((.(((((((((.((.....))))))))))).)))) ( -20.00) >DroSec_CAF1 31543 86 + 1 ------------------UCUUAAUA-------------CAUUUUUAUUUGUCCUCGUUGAAAUUCCCGCCAAGAUCACAGCUUUUGGCCCAGUGUACUUGGCCUGGGUUAGCAGUU ------------------........-------------.................(((((....(((((((((..(((.((.....))...)))..))))))..)))))))).... ( -18.60) >DroYak_CAF1 36802 116 + 1 UGCAAUUAAAACCAAAAUAGGAAAUAUUUUA-UAGUAACCACUCUUGCCCCUUCUCGUUUAAAGUCCCGCCAAGAUCACAGCUUUUGGCCCAGUGUACUUGGCCUGGGCUAGCAGUU (((.....((((.((((((.....)))))).-..((((......))))........))))..(((((.((((((..(((.((.....))...)))..))))))..))))).)))... ( -24.60) >consensus ________________AUUAUAAAUAUUUUA__AGU__CCAUUCUUACCUGUCCUCGUUGAAAUUCCCGCCAAGAUCACAGCUUUUGGCCCAGUGUACUUGGCCUGGGUUAGCAGUU ...............................................................................((((.(((((((((.((.....))))))))))).)))) (-16.75 = -16.53 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:16 2006