| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,257,768 – 22,257,868 |
| Length | 100 |
| Max. P | 0.521936 |
| Location | 22,257,768 – 22,257,868 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.07 |
| Mean single sequence MFE | -24.40 |
| Consensus MFE | -20.40 |
| Energy contribution | -20.74 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.84 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.521936 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22257768 100 + 27905053 AU--AUA-UUUUCUUCCCCG------UGCUGUUUUCACUUGAGCGCAGCGAGGCAUUUAUCAUUUUUAAUCGAAUGCGGAAACAAUGGAGCGCGUCUAAGUGGAGCAUU----------- ..--...-...........(------((((....(((((((..(((.((...((((((.............))))))(....)......)))))..)))))))))))).----------- ( -26.22) >DroVir_CAF1 39989 100 + 1 ----UCGUUUCUUUUCU-----UUUCUUAUUUUUUCACUUGAGCGCAAUGAGGCAUUUAUCAUUUUUAAUCGAAUGCGGAAACAAUGGAGCGCGUCUAAGUGGAGCAUU----------- ----.............-----..........((((((((((((((......((((((.............))))))(....)......)))).)).))))))))....----------- ( -22.22) >DroGri_CAF1 60066 103 + 1 -----UGCUUUUGUUUUUCGGAUUUUUU-UUGUUUCACUUGAGCGCAGUGAAGCAUUUAUCAUUUUUAAUCGAAUGCGGAAACAAUGGAGCGCGUCUAAGUGGAGCAUU----------- -----.......................-.((((((((((((((((......((((((.............))))))(....)......)))).)).))))))))))..----------- ( -27.12) >DroWil_CAF1 96183 111 + 1 UUA--UU-UCUCGUCUUCUG------UUCUAUUUUCACUUGAACGCAGCCAGGCAUUUAUCAUUUUUAAUCGAAUGCGGAAACAAUGGAGCGCAUCUAAGUGGAGCACUUCUCUUCCAUA ...--..-..........((------((((((((.....((..(((..(((.((((((.............))))))(....)..))).)))))...))))))))))............. ( -20.62) >DroYak_CAF1 35688 97 + 1 -----UU-UUUCCUUUUUCG------UGCUGUUUUCACUUGAGCGCAGCGAGGCAUUUAUCAUUUUUAAUCGAAUGCGGAAACAAUGGAGCGCGUCUAAGUGGAGCAUU----------- -----..-...........(------((((....(((((((..(((.((...((((((.............))))))(....)......)))))..)))))))))))).----------- ( -26.22) >DroAna_CAF1 32438 102 + 1 GUAUCGG-UUGUGUUGUUCG------UGUUGUUUUCACUUGAGCGCAGCCAGGCAUUUAUCAUUUUUAAUCGAAUGCGGAAACAAUGGAGCGCGUCUAAGUAGAGCACU----------- .......-............------...((((((.(((((..(((..(((.((((((.............))))))(....)..)))...)))..)))))))))))..----------- ( -24.02) >consensus _____UG_UUUUGUUUUUCG______UGCUGUUUUCACUUGAGCGCAGCGAGGCAUUUAUCAUUUUUAAUCGAAUGCGGAAACAAUGGAGCGCGUCUAAGUGGAGCAUU___________ ................................((((((((((((((......((((((.............))))))(....)......)))).)).))))))))............... (-20.40 = -20.74 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:15 2006