Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,256,227 – 22,256,334 |
Length | 107 |
Max. P | 0.517927 |
Location | 22,256,227 – 22,256,334 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 80.70 |
Mean single sequence MFE | -25.62 |
Consensus MFE | -18.72 |
Energy contribution | -19.43 |
Covariance contribution | 0.71 |
Combinations/Pair | 1.08 |
Mean z-score | -1.12 |
Structure conservation index | 0.73 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517927 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22256227 107 + 27905053 ------CAACUGAAACUCCAUCUCGAUCCCCAAGUUGGACUCGCAUAACGGUUUGACAAUUUGCAAUGCGCCU------GCGCCGCCUGUCACUCCAGUUCAGCUCCUCGGGAUAUUUU ------...................(((((..(((((((((........((..(((((....((...(((...------.))).)).)))))..)))))))))))....)))))..... ( -26.80) >DroSec_CAF1 28895 101 + 1 ------C------AACUCCAUCUCGAUCCCCAAGUUGGACUCACAUAACGGUUUGACAAUUUGCAAUGCGCCU------GCGCCGCCUGUCACUCCAGUUCAGCUCCUCGGGAUUUUUU ------.------...........((((((..(((((((((........((..(((((....((...(((...------.))).)).)))))..)))))))))))....)))))).... ( -27.40) >DroSim_CAF1 29016 101 + 1 ------C------AACUCCAUCUCGAUCCCCAAGUUGGACUCACAUAACGGUUUGACAAUUUGCAAUGCGCCU------GCGCCGCCUGUCACUCCAGUUCAGCUCCUCGGGAUUUUUU ------.------...........((((((..(((((((((........((..(((((....((...(((...------.))).)).)))))..)))))))))))....)))))).... ( -27.40) >DroEre_CAF1 38045 101 + 1 ------------CAACUCCAUCUCGAUCCCAAAGUUGGCCUCGCAUAACGGUUUGACAAUUUGCAAUGCGCCU------GCGCCGCCUGUCACUCCAGUUCAGCUCCUCGGGAUUUUUU ------------............((((((..(((((..((........((..(((((....((...(((...------.))).)).)))))..))))..)))))....)))))).... ( -23.90) >DroYak_CAF1 34093 119 + 1 CAACUGCAACUGCAACUGCAUCUCGAUCCCAAAGUUGGCCACGCAUAACGGUUUGACAAUUUGCAAUGCGCCUGAGCCUGUGCCGCCUGUCACUCCAGUUCAGCUCCUCGGGAUUUUUU ....((((........))))....((((((..(((((..(..(.....)((..(((((....(((..((......))...)))....)))))..)).)..)))))....)))))).... ( -28.00) >DroAna_CAF1 30923 81 + 1 ------G----GAGAU------UGGAUCUCCA-----GCAUCACAUAACGGUUUGACAAUUUGCAAUGCGCCU------GCG---CCUGUCACUCCAGUUCGGGUCCUCCG-------- ------(----(((.(------(((....)))-----)...........((..(((((...((((.......)------)))---..)))))..))..........)))).-------- ( -20.20) >consensus ______C______AACUCCAUCUCGAUCCCCAAGUUGGACUCACAUAACGGUUUGACAAUUUGCAAUGCGCCU______GCGCCGCCUGUCACUCCAGUUCAGCUCCUCGGGAUUUUUU ...................(((((((.......((((........))))((..(((((....((...((((........)))).)).)))))..))...........)))))))..... (-18.72 = -19.43 + 0.71)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:14 2006