Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,869,882 – 2,870,101 |
Length | 219 |
Max. P | 0.871582 |
Location | 2,869,882 – 2,869,985 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.41 |
Mean single sequence MFE | -28.03 |
Consensus MFE | -19.17 |
Energy contribution | -18.80 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.08 |
Mean z-score | -1.59 |
Structure conservation index | 0.68 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582758 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2869882 103 - 27905053 ACAGUGCUUAGUUCAAGGAUAACCAAGAC-----------------AAUAAUUGGCAGGUGGAAAUAUGGUCGAAAUCGGUGACCUUGGACCGGCCAUUUACCAAUGGUAAUGACCAUUU ..((((.(..((((((((...(((.....-----------------.......(((..((....))...)))(....))))..))))))))..).))))....((((((....)))))). ( -24.80) >DroSec_CAF1 822 113 - 1 ACAGC-CUGAGUUCAAGGAUAACCAAAUCGAAAAACAUCG------AACAAUUGGCAGGUGGAAAUAUGGUCGAAAUCUGUGACCUUGGACCGGCCAUUUACCAAUGGUAAUGACCAUUU ...((-(.(.((((((((.........((((......)))------)....(((((..((....))...))))).........))))))))))))........((((((....)))))). ( -28.60) >DroSim_CAF1 1180 113 - 1 ACAGC-CUGAGUUCAAGGUUAACCAAAUCGAAAAACAUCG------AACAAUUGGCAGGUGGAAAUAUGGUUGAAAUCUGUGACCUUGGACCGGCCAUUUACCAAUGGUAAUGACCAUUU ...((-(.(.(((((((((((.((((.((((......)))------)....))))(((((...(((...)))...))))))))))))))))))))........((((((....)))))). ( -31.50) >DroEre_CAF1 1724 119 - 1 ACAGC-CUUAGUUCAAGGAUAACCAAAAAUAACAACAUUGAACAGGAACAAUUGGCAGGUGUAAAUAUGGUCAAAAUCGCUGACCUUGGACCGGCCAUUCACCAAUGGUAAUGACCAUUU ....(-((..((((((.....................)))))))))......((((.(((.(((....(((((.......)))))))).))).))))......((((((....)))))). ( -27.20) >consensus ACAGC_CUGAGUUCAAGGAUAACCAAAACGAAAAACAUCG______AACAAUUGGCAGGUGGAAAUAUGGUCGAAAUCGGUGACCUUGGACCGGCCAUUUACCAAUGGUAAUGACCAUUU ..........((((((((.................................(((((..((....))...)))))..((...)))))))))).((.((((.(((...))))))).)).... (-19.17 = -18.80 + -0.37)
Location | 2,869,922 – 2,870,025 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.26 |
Mean single sequence MFE | -30.17 |
Consensus MFE | -21.45 |
Energy contribution | -20.95 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.17 |
Mean z-score | -1.79 |
Structure conservation index | 0.71 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.751558 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2869922 103 - 27905053 UCCAUUGUCAUAGAAAGGGCCAUGGCCCGACUGUCGAAGCACAGUGCUUAGUUCAAGGAUAACCAAGAC-----------------AAUAAUUGGCAGGUGGAAAUAUGGUCGAAAUCGG ((((((((((......((((....))))...((((.((((.....)))).......((....))..)))-----------------).....))))).)))))........((....)). ( -28.00) >DroSec_CAF1 862 113 - 1 UCCAUUGUUACAGAAAGGGCCAUGGCCCAACUGUCCAGGCACAGC-CUGAGUUCAAGGAUAACCAAAUCGAAAAACAUCG------AACAAUUGGCAGGUGGAAAUAUGGUCGAAAUCUG ..........((((...(((((((..(((.((((((((((...))-))).((((..((....)).....((......)))------)))....))))).)))...)))))))....)))) ( -33.40) >DroSim_CAF1 1220 113 - 1 UCCAUUGUUACAGAAAGGGCCAUGGCCCAACUGUCGAGGCACAGC-CUGAGUUCAAGGUUAACCAAAUCGAAAAACAUCG------AACAAUUGGCAGGUGGAAAUAUGGUUGAAAUCUG .((((..((((.....((((....))))..(((((((((...(((-((.......)))))..))...((((......)))------)....)))))))))))....)))).......... ( -32.20) >DroEre_CAF1 1764 119 - 1 UCCAUUGUCACAGAAAGGACCAUGGUCCAACUGUUGAGGCACAGC-CUUAGUUCAAGGAUAACCAAAAAUAACAACAUUGAACAGGAACAAUUGGCAGGUGUAAAUAUGGUCAAAAUCGC .((((...(((.....((((....))))..((((..((((...))-)...((((((.....................))))))........)..))))))).....)))).......... ( -27.10) >consensus UCCAUUGUCACAGAAAGGGCCAUGGCCCAACUGUCGAGGCACAGC_CUGAGUUCAAGGAUAACCAAAACGAAAAACAUCG______AACAAUUGGCAGGUGGAAAUAUGGUCGAAAUCGG .((((..((((.....((((....))))..(((((((.(.((........)).)..((....))...........................)))))))))))....)))).......... (-21.45 = -20.95 + -0.50)
Location | 2,869,985 – 2,870,101 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.33 |
Mean single sequence MFE | -31.40 |
Consensus MFE | -25.71 |
Energy contribution | -26.27 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.12 |
Mean z-score | -1.90 |
Structure conservation index | 0.82 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.871582 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2869985 116 + 27905053 GCUUCGACAGUCGGGCCAUGGCCCUUUCUAUGACAAUGGAAUAACUGAUCUGUCAUGGUUAUAAUUUACACAAUGGAAAUAAUAAUCAUCCAUUGCAGGCCGACACU----GGGUUCGGG ((...(((((((((((....)))).((((((....)))))).....)).)))))((((((((.((((.(.....).)))).)))))))).....))...((((....----....)))). ( -32.60) >DroSec_CAF1 935 114 + 1 GCCUGGACAGUUGGGCCAUGGCCCUUUCUGUAACAAUGGAAUAACUGAUCUGUCAUGGUUAUAAUUUAUACAAUGGAAAUAAUAAUCAUCCAUUGCAGGCCGACAGU----C-UCAC-AU (((((.((((..((((....))))...))))..(((((((.....(((....)))(((((((.((((.........)))).))))))))))))))))))).......----.-....-.. ( -34.60) >DroSim_CAF1 1293 116 + 1 GCCUCGACAGUUGGGCCAUGGCCCUUUCUGUAACAAUGGAAUAACUGAUCUGUCAUGGUUAUAAUUUACACAAUGGUAAUAAUAAUCAUCCAUUGCAGGCCGACACU----GGUUACGGU ((((..((((..((((....))))...))))..(((((((.....(((....)))(((((((...((((......))))..)))))))))))))).))))....(((----(....)))) ( -35.20) >DroEre_CAF1 1843 115 + 1 GCCUCAACAGUUGGACCAUGGUCCUUUCUGUGACAAUGGAAUUACUGAUCUGUCAUGGUUAUAAUUUACACAAGGGAAAUAAUAAUUAUCC-----AGGCUCACAUCCUACGUAUUUACG ((((..((((..((((....))))...)))).......((((((.(((((......)))))))))))......(((.(((....))).)))-----)))).................... ( -23.20) >consensus GCCUCGACAGUUGGGCCAUGGCCCUUUCUGUAACAAUGGAAUAACUGAUCUGUCAUGGUUAUAAUUUACACAAUGGAAAUAAUAAUCAUCCAUUGCAGGCCGACACU____GGUUACGGG ((((..((((..((((....))))...))))..(((((((.....(((....)))(((((((.((((.(.....).)))).)))))))))))))).)))).................... (-25.71 = -26.27 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:13 2006