| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,254,204 – 22,254,306 |
| Length | 102 |
| Max. P | 0.695718 |
| Location | 22,254,204 – 22,254,306 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 87.75 |
| Mean single sequence MFE | -36.08 |
| Consensus MFE | -27.45 |
| Energy contribution | -28.48 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.90 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.695718 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22254204 102 - 27905053 GAGUGGUUAAAUGCUGUGCGGAGCUGUGCUGCAGUAAUAGCAGCAACAUGCAACGCGACAGUUGCC-UACACCCAGGGGAACUGCUC---GAAACACAGGGAAAAA------------- (((..(((....((((((((..((((((((((.......))))).))).))..))).)))))....-....((....)))))..)))---................------------- ( -35.90) >DroSec_CAF1 26846 103 - 1 GAGUGGUUAAAUGCUGUGCGGAGCUGUGCUGCAGUAAUAGCAGCAACAUGCAACUCGACAGUUGCC-UACUCCCAGGGGAACUGCUC---AAAACACAGGGAAAAAU------------ (((..(((.....((.((.((((.((((((((.......))))).))).((((((....)))))).-..)))))).)).)))..)))---.................------------ ( -33.70) >DroSim_CAF1 26980 103 - 1 GAGUGGUUAAAUGCUGUGCGGAGCUGUGCUGCAGUAAUAGCAGCAACAUGCAACGCGACAGUUGCC-UACACCCAGGGGAACUGCUC---AAAACACAGGGAAAAAU------------ (((..(((....((((((((..((((((((((.......))))).))).))..))).)))))....-....((....)))))..)))---.................------------ ( -35.90) >DroEre_CAF1 35967 102 - 1 GAGUGGUUAAAUGCUGUGCGGAGCUGUGCUGCAGUAAUGGCAGCAACAUGCAACGCGACAGUUGCC-UACACCCAGGGGAACUGCUC---AAAACACAGG-AAAAAA------------ (((..(((....((((((((..((((((((((.......))))).))).))..))).)))))....-....((....)))))..)))---..........-......------------ ( -35.80) >DroYak_CAF1 31948 106 - 1 GAGUGGUUAAAUGCUGUGCGGUGCUGUGCUGCAGUAAUAGCAGCAACAUGCAACGCGACAGUUGCC-UACACCCAGGGGAACUGCUCGAAAAAACACAGGGAAAAAG------------ (((..(((....((((((((.(((((((((((.......))))).))).))).))).)))))....-....((....)))))..)))....................------------ ( -36.60) >DroAna_CAF1 28860 116 - 1 GAGUGGUUAAAUGCUGUUCUGUGCUGCGCCGCAGUAAUAGCAGCAACAUGCAACGCGACAGUUGCCCCACACCCAGGGGAACUUUGC---CACUUGCAGAAAAAAAAGAAACACUGAUA .((((......(((((((...((((((...))))))..)))))))...(((((.((((.((((.((((.......))))))))))))---...))))).............)))).... ( -38.60) >consensus GAGUGGUUAAAUGCUGUGCGGAGCUGUGCUGCAGUAAUAGCAGCAACAUGCAACGCGACAGUUGCC_UACACCCAGGGGAACUGCUC___AAAACACAGGGAAAAAA____________ ((((((((....((((((((..((((((((((.......))))).))).))..))).))))).........((....))))))))))................................ (-27.45 = -28.48 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:12 2006