Locus 8337

Sequence ID 3R_DroMel_CAF1
Location 22,253,630 – 22,253,743
Length 113
Max. P 0.536156
window13441

overview

Window 1

Location 22,253,630 – 22,253,743
Length 113
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 91.47
Mean single sequence MFE -35.04
Consensus MFE -25.26
Energy contribution -25.26
Covariance contribution -0.00
Combinations/Pair 1.15
Mean z-score -1.89
Structure conservation index 0.72
SVM decision value 0.01
SVM RNA-class probability 0.536156
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22253630 113 - 27905053
GAAAAAGCCGCCCGGCAUAAGCAGCGGGUUAAGGGCUAAAAACCAAAC--AGCUGUUCGUGGCUGCAAUAAUGAGAAAUGCAGCUCAGUUAAGCACGGCCAUUAAAAGCGGUCUG
......(((((((((((..((((((..(((..((........)).)))--.))))))..)(((((((...........))))))).......)).))).........)))))... ( -32.20)
>DroSec_CAF1 26275 115 - 1
GAAAAAGCCGCCCGGCAUAAGCAGCGGGUUAAGGGCUAAAAACCAAACUGAGCUGUUCGUGGCUGCAGUAAUGAGAAAUGCAGCUCAGUUUAGCACGGCCAACAAAAGCGGUCAG
.....(((((((((((....))..)))))....)))).......((((((((((((..((..((.((....))))..)))))))))))))).....((((.........)))).. ( -38.60)
>DroSim_CAF1 26407 115 - 1
GAAAAAGCCGCCCGGCAUAAGCAGCGGGUUAAGGGCUAAAAACCAAACUGAGCUGUUCGUGGCUGCAGUAAUGAGAAAUGCAGCUCAGUUUACCACGGCCAACAAAAGCGGUCUG
......(((((((.((.......)).)).....((((.......((((((((((((..((..((.((....))))..)))))))))))))).....)))).......)))))... ( -38.40)
>DroEre_CAF1 35352 114 - 1
GAAAAAGCCGC-CGGAGUAAGCAGCGGGCUAAGAGCUAAAAACCAAACUGAGCUGUUCGUGGCUGCAGUAAUGAGAAAUGCAGCGGAGUUUAGCAUGGCCAUCAAAAGCGGUCUG
......(((((-((..(....)..))(((((...((((((..((.(((......)))....((((((...........))))))))..)))))).))))).......)))))... ( -32.90)
>DroYak_CAF1 31395 114 - 1
AAAAAAGCCGC-CGGCAUAAGCAGCGGGUUAAGGGCUAAAAAGCAAAGUGAGCCGUUCGUGGCUGCAGUAAUGAGAAAUGCAGCGGAAUUUGGCAUGGCCAUCAAAAGCGGUCUG
.....((((((-(.((.......)).)))....))))..............((((((..((((((((...........))))))......((((...)))).))..))))))... ( -33.10)
>consensus
GAAAAAGCCGCCCGGCAUAAGCAGCGGGUUAAGGGCUAAAAACCAAACUGAGCUGUUCGUGGCUGCAGUAAUGAGAAAUGCAGCUCAGUUUAGCACGGCCAUCAAAAGCGGUCUG
.......((((...((....)).))))((((((((((.............)))).......((((((...........))))))....))))))..((((.........)))).. (-25.26 = -25.26 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:11 2006