Locus 8334

Sequence ID 3R_DroMel_CAF1
Location 22,247,027 – 22,247,121
Length 94
Max. P 0.956798
window13436

overview

Window 6

Location 22,247,027 – 22,247,121
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 70.27
Mean single sequence MFE -20.50
Consensus MFE -6.70
Energy contribution -8.54
Covariance contribution 1.84
Combinations/Pair 1.17
Mean z-score -2.15
Structure conservation index 0.33
SVM decision value 1.47
SVM RNA-class probability 0.956798
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22247027 94 - 27905053
CCUCUAAAGCUGCAAUCAGUCCCAUACCAUUUUCAGACAUUGUCCGGGCACUUACAUAAUGCUGCAACGGUCCGACGUUGAGCUGCACUAGAAU
..(((..((.((((...((((((..((.((........)).))..))).)))........(((.(((((......))))))))))))))))).. ( -18.90)
>DroSec_CAF1 19382 93 - 1
CCUCUAAAGCUGCAACCAGUC-CAUCCCAUUUUCAGACAUUGUCCGGGCAAUUACAUAAUUCUGUAAUGGUCCCACGUUGAGCUGCGCUAGAAA
..((((.((((.((((..(((-.............))).......((((.((((((......)))))).))))...))))))))....)))).. ( -21.02)
>DroSim_CAF1 19468 88 - 1
CCUCUAAAGCUGCAACCAGUC-CAUCCCAUUUUCAGACAUUGUCCGUGCAAUUACAUAAUUCUGUAAUGGUCCGACGUUGAG-----CUAGAAA
..(((..((((.((((..(((-....(((((..((((.(((((..(((....)))))))))))).)))))...)))))))))-----))))).. ( -19.60)
>DroEre_CAF1 26432 84 - 1
CUUCUAAAGCUC----------AAUCCCAUUUUCAGACAUUGUCCGGGCAAUUACAUAAUUCUGUAAUUGUCCGACGUUGAGCUGCUCUAAAAU
.......(((((----------(((..........(((...)))((((((((((((......))))))))))))..)))))))).......... ( -26.70)
>DroAna_CAF1 20668 74 - 1
UUUUAAAAGCUA----------AG-------CCCUGACAUUGUUUAGAAAAGGACAUAAAGCUUUAAAUGUCCAUUUUUAAGCUGCG---GAAU
............----------..-------..(((.((..(((((((((.((((((..........)))))).)))))))))))))---)... ( -16.30)
>consensus
CCUCUAAAGCUGCAA_CAGUC_CAUCCCAUUUUCAGACAUUGUCCGGGCAAUUACAUAAUUCUGUAAUGGUCCGACGUUGAGCUGCGCUAGAAU
.......((((........................(((...)))(((((.((((((......)))))).)))))......)))).......... ( -6.70 =  -8.54 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:06 2006