| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,246,426 – 22,246,527 |
| Length | 101 |
| Max. P | 0.815478 |
| Location | 22,246,426 – 22,246,527 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 77.75 |
| Mean single sequence MFE | -28.82 |
| Consensus MFE | -14.27 |
| Energy contribution | -14.27 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.815478 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22246426 101 - 27905053 AACG----------CUAAAUUAAGAAAUU-UUUGGCAGAACUAAUGUCCCGCAUUAGUCAAAUGUCAAAAUUGUUUGCCACGGACCAG---AAGGUUCGGUUUUGGCCUGCUCUC ...(----------(........(((..(-(((((((..(((((((.....)))))))....))))))))...)))((((((((((..---..))))))....))))..)).... ( -28.30) >DroPse_CAF1 26312 95 - 1 AGCC----------GUAAAUUAAGAAAUUUUUUGGCAGAACUAAUGUUCCGCAUUAGUCAAAUGUCAAAAUUGUUUGGCGCGGAGCUGCCGGAGGUG-------GGUCUGC---G .(((----------(......((....))((((((((..(((((((.....)))))))....)))))))).....))))(((((.(..((...))..-------).)))))---. ( -32.40) >DroSec_CAF1 18776 101 - 1 AACG----------CUAAAUUAAGAAAUU-UUUGGCAGAACUAAUGUCCCGCAUUAGUCAAAUGUCAAAAUUGUUUGCCACGGACCAG---AAGAUUUGGUUUUGGCCUGCUUUC ...(----------(........(((..(-(((((((..(((((((.....)))))))....))))))))...)))((((.(((((((---(...))))))))))))..)).... ( -27.70) >DroEre_CAF1 25836 100 - 1 AACG----------CUAAAUUAAGAAAUU-UUUGGCAGAACUAAUGUCCCGCAUUAGUCAAAUGUCAAAAUUGUUUGCCACG-ACCAG---AGGGUUUGGCUUUGGUAUGCUCUC ...(----------(((((....(((..(-(((((((..(((((((.....)))))))....))))))))...)))((((.(-(((..---..))))))))))))))........ ( -27.60) >DroAna_CAF1 20021 109 - 1 CACCUUUCUCUUCCGUAAAUUAAGAAAUU-UUUGGCAGAACUAAUGUCCCGCAUUAGUCAAAUGUCAAAAUUGUUUGCGACUGA--GG---GUGGUUUGAGUUGGUCUGGCUCCA .(((.(((((...(((((((........(-(((((((..(((((((.....)))))))....))))))))..)))))))...))--))---).)))..(((((.....))))).. ( -30.40) >DroPer_CAF1 34297 95 - 1 AGCC----------GUAAAUUAAGAAAUUUUUUGGCAGAACUAAUGUUCCGCAUUAGUCAAAUGUCAAAAUUGUUUGGCGCGGAGCUGCCGGAGGUG-------GGUCUUC---G .(((----------(......((....))((((((((..(((((((.....)))))))....)))))))).....))))(.(((.(..((...))..-------).))).)---. ( -26.50) >consensus AACC__________CUAAAUUAAGAAAUU_UUUGGCAGAACUAAUGUCCCGCAUUAGUCAAAUGUCAAAAUUGUUUGCCACGGACCAG___AAGGUUUGG_UUUGGCCUGCUCUC ........................((((..(((((((..(((((((.....)))))))....)))))))...))))....................................... (-14.27 = -14.27 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:05 2006