| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,242,338 – 22,242,437 |
| Length | 99 |
| Max. P | 0.912239 |
| Location | 22,242,338 – 22,242,437 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 77.70 |
| Mean single sequence MFE | -33.65 |
| Consensus MFE | -21.58 |
| Energy contribution | -21.95 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.912239 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22242338 99 - 27905053 CGA----CUGA---GCGGCGAAGAGCGAUGCAUGUGAUUAAAAAAGCGCUGCCAUAAUUUGGCUUUAAUUGGCUUGACGCGUCGCGUGCUGCCG----UUGCUAUAGUCG (((----((((---((((((.((.(((((((..(((..........))).((((.....))))...............)))))))...))..))----))))).)))))) ( -37.30) >DroPse_CAF1 22215 84 - 1 UG-------GA---GAGCUGAAGAGCGAUGCAUGUGAUUAAAAAAGCGCUGCCAUAAUUUGGCUUUAAUUGGCUUGACGCGUCGCGUGCUGCG----------G------ ..-------..---..(((....)))...(((((((((.....((((.(.((((.....)))).......))))).....)))))))))....----------.------ ( -23.20) >DroSec_CAF1 14726 99 - 1 CGA----CUGA---GCGGCGAAGAGCGAUGCAUGUGAUUAAAAAAGCGCUGCCAUAAUUUGGCUUUAAUUGGCUUGACGCGUCGCGUGCUGCCG----UCGCUAUAGUCG (((----((((---((((((.((.(((((((..(((..........))).((((.....))))...............)))))))...))..))----))))).)))))) ( -39.30) >DroYak_CAF1 19463 103 - 1 UGACUACGUCG---GCGGCGAAGAGCGAUGCAUGUGAUUAAAAAAGCGCUGCCAUAAUUUGGCUUUAAUUGGCUUGACGCGUCGCGUGCUGCCG----UCGCUAUAGUCG .(((((((.((---((((((....(((((((..(((..........))).((((.....))))...............))))))).))))))))----.))...))))). ( -41.90) >DroMoj_CAF1 18265 92 - 1 CGAG-----GGGGGGCGGCACAAAACGUUGCAUAUCAUUAAA-AACGGCUGCUUUAAUUUGGCUUUAAUUGGCUUGACGCGUUGCGUGCUGCU------CGCUG------ ....-----((.(((((((((..(((((..((..(((((((.-...(((((........))))))))).)))..))..)))))..))))))))------).)).------ ( -29.60) >DroAna_CAF1 15648 94 - 1 UGA----CUGA---CAAGCGGCGAGCGAUGCAUGUGAUUUAAAAAGCGCUGCCAUAAUUUGGCUUUAAUUGGCUUGACGCGUCGCGUGCUGCCUGGAAUCC--------- ...----....---((.((((((.(((((((..(((..........))).((((.....))))...............))))))).)))))).))......--------- ( -30.60) >consensus CGA____CUGA___GCGGCGAAGAGCGAUGCAUGUGAUUAAAAAAGCGCUGCCAUAAUUUGGCUUUAAUUGGCUUGACGCGUCGCGUGCUGCCG____UCGCUA______ ..............((((((....(((((((..(((..........))).((((.....))))...............))))))).)))))).................. (-21.58 = -21.95 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:02 2006