| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,240,522 – 22,240,642 |
| Length | 120 |
| Max. P | 0.698218 |
| Location | 22,240,522 – 22,240,642 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.67 |
| Mean single sequence MFE | -43.70 |
| Consensus MFE | -34.49 |
| Energy contribution | -33.93 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.698218 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22240522 120 - 27905053 CGGAGGAACACUUCGCCUAAUGGCGAGAACUGUAGCCACUCCAAUAUCCGCUGGCGGAUGAUUUUUGUUGCUCUGCAAUCCAGGCAUCACCAUGCUGGGUUGCAAAAGAGUUCCCUCGAG ..((((......(((((....)))))(((((.((((.((.....((((((....))))))......)).))).((((((((((.(((....)))))))))))))..).)))))))))... ( -46.50) >DroSec_CAF1 12937 120 - 1 CGGAGGAACACUUCGUCUAAUGGCGAGAACAGUUGCCACUCCAAUAUCCGCUGGCGGAUGAUUUUUGUUGCUCUGCAAUCCAGGCAUCACCAUGCUGGGUUGCAAAAGAGUUCCCUCGAG ((..(((((..((((((....)))))).......((.((.....((((((....))))))......)).))..((((((((((.(((....))))))))))))).....)))))..)).. ( -43.10) >DroSim_CAF1 12993 120 - 1 CGGAGGAACACUUCGUCUAAUGGCGAGAACAGUUGCCACUCCAAUAUCCGCUGGCGGAUGAUUUUUGUUGCUCUGCAAUCCAGGCAUCACCAUGCUGGGUUGCAAAAGAGUUCCCUCGAG ((..(((((..((((((....)))))).......((.((.....((((((....))))))......)).))..((((((((((.(((....))))))))))))).....)))))..)).. ( -43.10) >DroEre_CAF1 20021 120 - 1 CGGAGGCACAGUUCGUCUAAUGGCGAGAACUGUAGCCAUUCCAAUAUCCGAGGCUGGAUGGUUCUUAUUGCUCUGCAGUCCAGGCAUCACCAUGCUGGGCUGCAAAAGAGUUCCCUCAAG .((((((((((((((((....)))))..))))).)))..))).......((((..(((....)))....((((((((((((((.(((....))))))))))))...)))))..))))... ( -46.70) >DroYak_CAF1 17661 120 - 1 CGGAGGUACAGUUCGCCUGAUGGCGAGAACUGUUGCCAUUCCAAUAUCCGAUGGUGGAUGAUUUUUAUUGCUCUGCAGUCCGGGCAUCACCAUGCUGGGUUGCAACAGAGUUCCCUCAAG .((((((((((((((((....)))))..)))).))))..)))..((((((....)))))).........(((((((((.((.(((((....))))).))))))...)))))......... ( -42.10) >DroAna_CAF1 13126 120 - 1 GGGCGGCACUGUCCGUCGAAUGGAAAGUACUGUUGCCAGUCCGAUGUCUGAAGGUGGAUGAUUUUUAUUACUUUGCAGGCCUGGUGUAACCAUACUGGGUUGCAGCAGAGUCCCCUCCAA (((.((((((.(((((...))))).))).((((((((((......(((((((((((.((((...)))))))))).))))))))))((((((......))))))))))).))))))..... ( -40.70) >consensus CGGAGGAACACUUCGUCUAAUGGCGAGAACUGUUGCCACUCCAAUAUCCGAUGGCGGAUGAUUUUUAUUGCUCUGCAAUCCAGGCAUCACCAUGCUGGGUUGCAAAAGAGUUCCCUCGAG ..((((......(((((....)))))((((....((.((.....((((((....))))))......)).))..((((((((.(((((....))))))))))))).....))))))))... (-34.49 = -33.93 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:01 2006