Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,868,421 – 2,868,541 |
Length | 120 |
Max. P | 0.777280 |
Location | 2,868,421 – 2,868,541 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.73 |
Mean single sequence MFE | -25.03 |
Consensus MFE | -23.94 |
Energy contribution | -23.72 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.42 |
Structure conservation index | 0.96 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.777280 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2868421 120 - 27905053 UCCAGCAACACCACUCUGUUCGGGAAUCCUCUUUUUUUUUUUGCCGCAAAGUUCCAUUGACCAUCGAAGCCAAAAUACUUGGCAUCGCAAUGAAUCGUGUCUGGCAUUAAUCCCUGCCAC ....((((((......)))).((((............((..(((((((..((((.((((.....(((.(((((.....))))).)))))))))))..)))..))))..)))))).))... ( -26.30) >DroEre_CAF1 277 109 - 1 ------CA-UCCACUCGAUUUGGGAGUCCUCUUU----UUUUGCCGCAAAGUUCCAUUGACCAUUGAAGCCAAAAUACUUGGCAUCGCAAUGAAUCGUGUCUGGCAUUAAUCCCUGCCAC ------..-............((((........(----(..(((((((..((((.((((.....(((.(((((.....))))).)))))))))))..)))..))))..))))))...... ( -23.50) >DroYak_CAF1 216 115 - 1 UCCAACCA-UUCACUCAAUUCGGGAAUCCUCUUU----UUUUGCCGCAAAGUUCCAUUGACCAUCGAAGCCAAAAUACUUGGCAUCGCAAUGAAUCGUGUCUGGCAUUAAUCCCUGCCAC ........-............((((........(----(..(((((((..((((.((((.....(((.(((((.....))))).)))))))))))..)))..))))..))))))...... ( -25.30) >consensus UCCA_CCA_UCCACUCAAUUCGGGAAUCCUCUUU____UUUUGCCGCAAAGUUCCAUUGACCAUCGAAGCCAAAAUACUUGGCAUCGCAAUGAAUCGUGUCUGGCAUUAAUCCCUGCCAC .....................((((................(((((((..((((.((((.....(((.(((((.....))))).)))))))))))..)))..))))....))))...... (-23.94 = -23.72 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:11 2006