Locus 8328

Sequence ID 3R_DroMel_CAF1
Location 22,234,475 – 22,234,570
Length 95
Max. P 0.775670
window13428

overview

Window 8

Location 22,234,475 – 22,234,570
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 95.37
Mean single sequence MFE -29.50
Consensus MFE -28.66
Energy contribution -28.14
Covariance contribution -0.52
Combinations/Pair 1.16
Mean z-score -1.15
Structure conservation index 0.97
SVM decision value 0.54
SVM RNA-class probability 0.775670
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22234475 95 - 27905053
CAUUGCACAUUUGUUUGGCAAAGCCAUUGGGGCGGCAGUUUGUUGGUUGGGUGGCUAUGGGGAAAUGGUGACAAAUAACUUGGACGGUCCGGGAA
..((((.((......))))))(((((((.((.((((.....)))).)).))))))).........((....)).....(((((.....))))).. ( -28.00)
>DroSec_CAF1 6843 95 - 1
CAUUGCACAUUUGUUUGGCAAAGCCAUUGGGACGGCAGUUUGUUGGUUGGGUGGCUAUGGGGAAAUGGUGACAAAUAACUUGGACGGUCCGGGAA
(((.((.(((..(.(..((((((((........)))..)))))..).)..))))).)))......((....)).....(((((.....))))).. ( -26.20)
>DroSim_CAF1 6870 95 - 1
CAUUGCACAUUUGUUUGGCAAAGCCAUUGGGGCGGCAGUUUGUUGGUUGGGUGGCUAUGGGGAAAUGGUGACAAAUAACUUGGACGGUCCGGGAA
..((((.((......))))))(((((((.((.((((.....)))).)).))))))).........((....)).....(((((.....))))).. ( -28.00)
>DroEre_CAF1 13924 95 - 1
CAUUGCACAUUUGUUUGGCAAAGCCAUUGGGGCGGCAGUUUGCCGGCUGGGUGGCACUGGGGAAAUGGUGACAAAUAACUUGGACGGCCCGGGAA
..((((.((......)))))).((((((.((.((((.....)))).)).)))))).(((((....((....)).....(......).)))))... ( -35.90)
>DroYak_CAF1 11523 95 - 1
CAUUGCACAUUUGUUUGGCAAAGCCAUUGGGGCGGCAGCUUGUUGGCCGGGCGGCAAUGGGGAAAUGGUGACAAAUAACUUGGACGGUCCGGGAA
((((((...((((.....))))(((....((.((((.....)))).)).))).))))))......((....)).....(((((.....))))).. ( -29.40)
>consensus
CAUUGCACAUUUGUUUGGCAAAGCCAUUGGGGCGGCAGUUUGUUGGUUGGGUGGCUAUGGGGAAAUGGUGACAAAUAACUUGGACGGUCCGGGAA
..((((.((......)))))).((((((.((.((((.....)))).)).))))))..........((....)).....(((((.....))))).. (-28.66 = -28.14 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:58 2006