Locus 8327

Sequence ID 3R_DroMel_CAF1
Location 22,230,638 – 22,230,734
Length 96
Max. P 0.591261
window13427

overview

Window 7

Location 22,230,638 – 22,230,734
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 90.38
Mean single sequence MFE -26.08
Consensus MFE -20.44
Energy contribution -20.60
Covariance contribution 0.16
Combinations/Pair 1.15
Mean z-score -1.49
Structure conservation index 0.78
SVM decision value 0.12
SVM RNA-class probability 0.591261
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22230638 96 - 27905053
AGUGAGUGUGGGUGGUUGGUUCUACAUCGGUGUGAGUUUAGUAUCGUGUGUGCAUUCACUCAUUUUACUUAAUAACUCAGUGCAAGUGUACGUAAU
(.(((.((((((........))))))))).).((((((.((((..(((.(((....))).)))..))))....))))))((((....))))..... ( -23.70)
>DroSec_CAF1 3044 92 - 1
AGUGAGUGUGGGUG----GUUCUGCAUCGGUGUGAGUUUAGUAUCGUGUGUGCAGUCACUCAUUUUACUUAAUAACUCAGUGCAAGUGCACGUAAU
((((((.(((((((----(..((((((..(..(((........)))..)))))))))))))))))))))..........((((....))))..... ( -27.60)
>DroSim_CAF1 3066 92 - 1
AGUAUGUGUGGGUG----GUUCUGCAUCGGUGUGAGUUUAAUAUCGUGUGUGCAGUCACUCAUUUUACUUAAUAACUCAGUGCAAGUGCACGUAAU
((((...(((((((----(..((((((((((((.......))))))...))))))))))))))..))))..........((((....))))..... ( -28.90)
>DroEre_CAF1 7624 91 - 1
AGUGAGUGUGGGUG----UC-CUGCAUCAGUGUGAGUUUAGUGUCGUGUGUGCAGUCGCUCAUUUUACUUAAUAACUCAGUGCAAGUGCACGUAUA
((((((.(((((((----..-((((((..(..(((........)))..))))))).)))))))))))))..........((((....))))..... ( -26.40)
>DroYak_CAF1 7690 92 - 1
AGUGAGUGUGGGUG----GCUCUGCGUCAGUGUGUGUUUAGAAUCGUGUGUGCAGUCACUCAUUUUACUUAAUAACUCAGUGCAAGUGCACGUAAA
((((((.(((((((----(((..(((...(..((..........))..).)))))))))))))))))))..........((((....))))..... ( -23.80)
>consensus
AGUGAGUGUGGGUG____GUUCUGCAUCGGUGUGAGUUUAGUAUCGUGUGUGCAGUCACUCAUUUUACUUAAUAACUCAGUGCAAGUGCACGUAAU
((((((.(((((((.......((((((..(..(((........)))..))))))).)))))))))))))..........((((....))))..... (-20.44 = -20.60 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:57 2006