Locus 8326

Sequence ID 3R_DroMel_CAF1
Location 22,230,085 – 22,230,175
Length 90
Max. P 0.627612
window13426

overview

Window 6

Location 22,230,085 – 22,230,175
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 88.89
Mean single sequence MFE -17.35
Consensus MFE -12.14
Energy contribution -11.57
Covariance contribution -0.56
Combinations/Pair 1.29
Mean z-score -1.83
Structure conservation index 0.70
SVM decision value 0.19
SVM RNA-class probability 0.627612
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22230085 90 - 27905053
UUAAAAAUCAAAUAGUUUUUACAUAACAAAUGCCUAUUGUUGAAUGAAUAAUGCUUUCAUUCGAAUGAGAGCUUAUAUUGCGGGCAAUUU
.(((((((......))))))).........(((((((((((.....))))))((((((((....)))))))).........))))).... ( -18.40)
>DroSec_CAF1 2470 89 - 1
UUAAAAAUCAAAUAGUUUUUGCAUAACAAAUGCUU-UUGUUGAAUGAAUAAUGCUUUCAGUCGAAUGAGAGCUUAUAUUGUGGGCAAUUU
..................((((...((((..((((-(..((((.((((.......)))).)).))..))))).....))))..))))... ( -17.80)
>DroSim_CAF1 2483 90 - 1
UUAAAAAUCAAAUAGUUUUUGCAUAACAAAUGCUCAUUGUUAAAUGAAUAAUGCUUUCAGUCGAAUGAGAGCUUAUAUUGUGGGCAAUUU
..................((((...((((....(((((....)))))((((.(((((((......))))))))))).))))..))))... ( -19.50)
>DroEre_CAF1 7145 88 - 1
--AAACAUCAAAUAGUUUAUACAUAACAAAUACUUAUUGUUAAAUGAAUAAUGCUCUCAUUCGAAUGCGGGCUUAAAUUGUAAACAAUUU
--............(((((((..((((((.......))))))..........((((.(((....))).))))......)))))))..... ( -13.70)
>consensus
UUAAAAAUCAAAUAGUUUUUACAUAACAAAUGCUUAUUGUUAAAUGAAUAAUGCUUUCAGUCGAAUGAGAGCUUAUAUUGUGGGCAAUUU
..............((((..(((((((((.......)))))).....((((.(((((((......)))))))))))..)))))))..... (-12.14 = -11.57 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:56 2006