| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,224,288 – 22,224,382 |
| Length | 94 |
| Max. P | 0.991398 |
| Location | 22,224,288 – 22,224,382 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 88.42 |
| Mean single sequence MFE | -20.48 |
| Consensus MFE | -16.69 |
| Energy contribution | -18.25 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.52 |
| Structure conservation index | 0.82 |
| SVM decision value | 2.27 |
| SVM RNA-class probability | 0.991398 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22224288 94 + 27905053 AAAGAAUAGAAUUCAAUUUAAAUAGAUUUCCGCUUAGGGGAAAUUUAAAAGA-G--GAGAAAAAAAGCGAUUGCCUCCAGAGAAGGCAAUUGUUAAC ...........(((..(((...(((((((((.(...).)))))))))...))-)--..)))....(((((((((((.......)))))))))))... ( -22.90) >DroSec_CAF1 59719 93 + 1 AAAGAAUAGAAUUCAAUUUAAAUAGAUUUCCGCUUAGGGGAAAUUUAAAAGA-G--GA-AAAAAAAGCGAUUGCCUCCAGAGAAGGCAAUUGUUAAC ...((((...))))........(((((((((.(...).))))))))).....-.--..-......(((((((((((.......)))))))))))... ( -22.00) >DroSim_CAF1 58633 93 + 1 AAAGAAUAAAAUUCAAUUUAAAUAGAUUUCCGCUUAGGGGAAAUUUAAAAGA-G--GA-AAAAAAAGCGAUUGCCUCCAGAGAAGGCAAUUGUUAAC ...((((...))))........(((((((((.(...).))))))))).....-.--..-......(((((((((((.......)))))))))))... ( -22.00) >DroAna_CAF1 92741 88 + 1 GAAGAAUAGAAUUCAAUUUAAAUAGAUUUCCGCUUAGGGGAAAUUUAAAAGGAAGCGA-AAAAAACACGA--------GGAGAAGGCUAUUGUAAGC ..(.(((((..(((........(((((((((.(...).)))))))))...(....)..-...........--------...)))..))))).).... ( -15.00) >consensus AAAGAAUAGAAUUCAAUUUAAAUAGAUUUCCGCUUAGGGGAAAUUUAAAAGA_G__GA_AAAAAAAGCGAUUGCCUCCAGAGAAGGCAAUUGUUAAC ...((((...))))........(((((((((.(...).)))))))))..................(((((((((((.......)))))))))))... (-16.69 = -18.25 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:49 2006