Locus 8322

Sequence ID 3R_DroMel_CAF1
Location 22,223,961 – 22,224,060
Length 99
Max. P 0.525599
window13417

overview

Window 7

Location 22,223,961 – 22,224,060
Length 99
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 99.33
Mean single sequence MFE -24.43
Consensus MFE -23.32
Energy contribution -23.10
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.49
Structure conservation index 0.95
SVM decision value -0.02
SVM RNA-class probability 0.525599
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22223961 99 - 27905053
UGGAAGCCAUUUUGCAGCACCAAUUCCCAUAUAUUUAUACUCUAAUGUAUACGUAUGUGAACAUACGGAUGCGGAUAUAUGGAUGCUCGGACGGACACA
.....(((..((((.(((((((..((((((.....(((((......)))))((((((....)))))).))).)))....))).)))))))).)).)... ( -27.10)
>DroSec_CAF1 59392 99 - 1
UGGAAGCCAUUUUGCAGCACCAAUUCCCAUAUAUUUAUACUCUAAUGUAUACGUAUAUGAACAUACGGAUGCGGAUAUAUGGAUGCUCGGACGGACACA
.....(((..((((.(((((((..((((((((((.(((((......))))).)))))))..(((....))).)))....))).)))))))).)).)... ( -23.10)
>DroSim_CAF1 58306 99 - 1
UGGAAGCCAUUUUGCAGCACCAAUUCCCAUAUAUUUAUACUCUAAUGUAUACGUAUAUGAACAUACGGAUGCGGAUAUAUGGAUGCUCGGACGGACACA
.....(((..((((.(((((((..((((((((((.(((((......))))).)))))))..(((....))).)))....))).)))))))).)).)... ( -23.10)
>consensus
UGGAAGCCAUUUUGCAGCACCAAUUCCCAUAUAUUUAUACUCUAAUGUAUACGUAUAUGAACAUACGGAUGCGGAUAUAUGGAUGCUCGGACGGACACA
.....(((..((((.(((((((..((((((((((.(((((......))))).)))))))..(((....))).)))....))).)))))))).)).)... (-23.32 = -23.10 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:48 2006