Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,862,013 – 2,862,103 |
Length | 90 |
Max. P | 0.679320 |
Location | 2,862,013 – 2,862,103 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 73.01 |
Mean single sequence MFE | -25.03 |
Consensus MFE | -14.64 |
Energy contribution | -15.58 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.31 |
Mean z-score | -1.42 |
Structure conservation index | 0.58 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.679320 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2862013 90 + 27905053 UAGGGCAAAGUAUCCCACGGAUCCCA------CAGUCUCCACCGCCGACGGCAACUUC--CCUGGUUCUCAAAUCCGUCGGCAGUUGUCACGUAAUAA ...(((((..........(((..(..------..)..)))...((((((((.((((..--...)))).......))))))))..)))))......... ( -22.90) >DroSec_CAF1 137009 89 + 1 UAGGGCAAAGUAUCCCACAGAUG-CA------CAGUCUCCACAGCCGACGGCAACUUC--CCUGGUUCUCAAAUCCGUCGGCAAUUGUCACGUAAUAA ...(((((.(((((.....))))-).------...........((((((((.((((..--...)))).......))))))))..)))))......... ( -24.70) >DroSim_CAF1 141848 89 + 1 UAAGGCAAAGUAUCCCACGGAUG-CA------CAGUCUCCACCGCCGACGGCAAGUUC--CCUGGUUCUCAAAUCCGUCGGCAAUUGUCACGUAAUAA ...(((((.((((((...)))))-).------...........((((((((..((..(--....)..)).....))))))))..)))))......... ( -28.30) >DroEre_CAF1 140332 94 + 1 UAUGGCGAAGUAUCAGACGGAUG-CACAUGAAGAGACUCCACCGCCGACGGCAACUU---CCAGGUUUUCAAAUCCGUCGGCAGUUGUCACGUAAUAA (((.(((..(((((.....))))-).........(((...((.((((((((.((((.---...)))).......)))))))).)).))).))).))). ( -26.80) >DroYak_CAF1 176083 88 + 1 UGUGGCACAGUGUCGCAGUGAUG-CACCUGAACAGUCUUCACCGCCGACGGCAACUUA--CCAUGUUCUCAAAUCCGUCGGC-------ACGUGAUAA ...(((.(((.((.(((....))-))))))....))).((((.((((((((.......--..............))))))))-------..))))... ( -26.00) >DroAna_CAF1 130627 87 + 1 GAUGGU----UUUUCCAGACACG-CA------CUAUCUUACCAGCCGACGGUUUCGUCAUCCUCAGUUACAAAUCCGUCGGUAGCUGCCAUGGAAGGA .....(----(((((((.....(-((------((.........((((((((.((.((.((.....)).)).)).)))))))))).)))..)))))))) ( -21.50) >consensus UAUGGCAAAGUAUCCCACGGAUG_CA______CAGUCUCCACCGCCGACGGCAACUUC__CCUGGUUCUCAAAUCCGUCGGCAGUUGUCACGUAAUAA ...(((((...(((.....))).....................((((((((.......................))))))))..)))))......... (-14.64 = -15.58 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:10 2006