Locus 8319

Sequence ID 3R_DroMel_CAF1
Location 22,217,262 – 22,217,362
Length 100
Max. P 0.542007
window13411

overview

Window 1

Location 22,217,262 – 22,217,362
Length 100
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 81.96
Mean single sequence MFE -18.78
Consensus MFE -11.54
Energy contribution -12.07
Covariance contribution 0.53
Combinations/Pair 1.21
Mean z-score -1.81
Structure conservation index 0.61
SVM decision value 0.02
SVM RNA-class probability 0.542007
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22217262 100 - 27905053
UUGAAAAAUAAUCAUAAUAAUGACG-GGCAUUGUUGUGCA-AAUUCCGAAUUCAAAACA---AAAACUAAGGGCCAAACA--GGCUGAAAGGCAAUUUGUACGCAAA
...............(((((((...-..)))))))(((((-(((((((....)......---.........((((.....--))))....)).)))))))))..... ( -19.80)
>DroVir_CAF1 84704 100 - 1
UUGAAAAAUAAUCAUAAUAAUGACG-GGCAUUGUGCUGAA-AAUUCUA-AUGCAGCACAGC--GAACCAAAAGAGAAGCUACAG--CAAAAGUAAUUUUUAAUAGUC
(((((((....((((....)))).(-(...((((((((..-.......-...)))))))).--...)).........((....)--)........)))))))..... ( -16.00)
>DroPse_CAF1 79559 106 - 1
UUGAAAAAUAAUCAUAAUAAUGACG-GGCAUUGUUACGAAGAAUUCCAAAUGCAAAACAGCACAAACUAAGGCCCAAGCCUUAGCUGAAAAGCAAUUUGUACCCAGG
...........((.((((((((...-..)))))))).))......((....((......))(((((.((((((....))))))(((....)))..))))).....)) ( -22.00)
>DroEre_CAF1 66895 101 - 1
UUGAAAAAUAAUCAUAAUAAUGACGGGGCAUUGUUGUGAA-AAUUCCGAAUUCAAAACA---AAAACUAAGGGCCAAACA--GGCUGAAAGGCAAUUUGUACGCAAG
...........(((((((((((......))))))))))).-...............(((---((..((...((((.....--))))...))....))))).(....) ( -18.30)
>DroYak_CAF1 59221 100 - 1
UUGAAAAAUAAUCAUAAUAAUGACG-GGCAUUGUUGUGAA-AAUUCCGAAUUCAAAACA---AAAACUAAGGGCCAAACA--GGCUGAAAAGCAAUUUGUACGCAAG
...........(((((((((((...-..))))))))))).-..................---.........(..((((..--.(((....)))..))))..)..... ( -17.90)
>DroAna_CAF1 85782 102 - 1
UUGAAAAAUAAUCAUAAUAAUGACG-GGCAUUGUUAUGAA-AAUUCCAAAUGCAAAACAU-AAAAACUAAGGCACAAACA--AGCUGAAAAGCAAUUUGUAUCCGAC
...........(((((((((((...-..))))))))))).-...................-.........((.(((((..--.(((....)))..)))))..))... ( -18.70)
>consensus
UUGAAAAAUAAUCAUAAUAAUGACG_GGCAUUGUUGUGAA_AAUUCCAAAUGCAAAACA___AAAACUAAGGGCCAAACA__AGCUGAAAAGCAAUUUGUACGCAAG
...........(((((((((((......)))))))))))............................................(((....))).............. (-11.54 = -12.07 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:43 2006