| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,216,712 – 22,216,815 |
| Length | 103 |
| Max. P | 0.686121 |
| Location | 22,216,712 – 22,216,815 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 81.11 |
| Mean single sequence MFE | -34.42 |
| Consensus MFE | -20.47 |
| Energy contribution | -21.58 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.686121 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22216712 103 - 27905053 AAAAUGUGUCUGCGUUGAG--UU-UGGGGUUUUGCGAAAAGCCAGACCUCGGGCAUUCCCAGU--ACAACGGAAACGGGGAAAAC-UUUUGUC----GUAGACGCCUUGAAAU .....(((((((((..(((--((-((((((((.((.....)).)))))))(((....)))...--.(..((....))..).))))-))....)----))))))))........ ( -38.40) >DroPse_CAF1 78936 108 - 1 AAAAUGUGUCUGCUACGAA--UCCUGGGGU--UACAACAGCCCAGACCUCGGGCAUUCCCUACACACAGCGGAAACGGGGAAAAAGUUUUCUUUCUUUUGG-CUUCCUGACAU .....(((((......(((--(((((((((--(...........))))))))).)))).........(((.((((..((((((....))))))..)))).)-))....))))) ( -29.90) >DroSec_CAF1 52127 103 - 1 AAAAUGUGUCUGCGUCGAG--UU-UGGGGUUUUGCGAAAAGCCAGACCUCGGGCAUUCCCAGC--ACAGCGGAAACGGGGAAAAC-UUGUGUC----GUAGAUGCCUUGAAAU .....(((((((((.((((--((-((((((((.((.....)).))))))).....(((((.((--...))(....))))))))))-)))...)----))))))))........ ( -38.60) >DroEre_CAF1 66356 102 - 1 AAAAUGUGUCUGCGUCGAC--UU-UGGGGUUUUACGAAAAGCCAGACCUCGGGCAUUCCCAGC--ACGGCGGAAACGG-GAAAAC-UUUGGUC----GUAGAUGCCUUUAAAU .(((.((((((((......--..-...((((((....)))))).((((..((...(((((.((--...))(....)))-)))..)-)..))))----)))))))).))).... ( -32.50) >DroYak_CAF1 58670 103 - 1 AAAAUGUGUCUGCGUCGAG--UU-UGGGGUUUUGCGAAAAGCCAGACCUCGGGCAUUCCCAGC--ACAGCGGAAACGGGGAAAAC-UUUUGUC----GUAGAUGCCUUGAAAU .....(((((((((.((((--((-((((((((.((.....)).))))))))))).(((((.((--...))(....).)))))...-..))).)----))))))))........ ( -39.80) >DroAna_CAF1 85164 105 - 1 AAAAUGUGUCUGCGUUGAGACUU-UGGGGU--AGCGAAAAGCCAGACUUCGAGCAUUCCCUGC--ACGACGGAAGCGA-GAAAAC-UUUUGCC-CAUGUGGAUGCUUUCGAGU .....(((((..(((((.....(-((((((--.((.....))...)))))))(((.....)))--.))))((..((((-((....-)))))))-)..)..)))))........ ( -27.30) >consensus AAAAUGUGUCUGCGUCGAG__UU_UGGGGUUUUGCGAAAAGCCAGACCUCGGGCAUUCCCAGC__ACAGCGGAAACGGGGAAAAC_UUUUGUC____GUAGAUGCCUUGAAAU .....((((((((............(((((((.((.....)).)))))))(((....))).........((....))....................))))))))........ (-20.47 = -21.58 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:42 2006