Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,201,637 – 22,201,739 |
Length | 102 |
Max. P | 0.992670 |
Location | 22,201,637 – 22,201,739 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 74.20 |
Mean single sequence MFE | -28.87 |
Consensus MFE | -12.65 |
Energy contribution | -13.43 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.06 |
Mean z-score | -2.77 |
Structure conservation index | 0.44 |
SVM decision value | 2.34 |
SVM RNA-class probability | 0.992670 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22201637 102 + 27905053 ACU-----CGGUUGCCUGUUUAUUUGUUGCCAUUUUUAGUUGCUUUAAACUUGCAGCUUAAUAGCAAUUCUCCGCUUGGCCACC-ACUUGGACGGCAGGCAAGC--CUUU ...-----.(((((((((((.....(((((.(((...((((((.........)))))).))).)))))..((((..(((...))-)..)))).))))))).)))--)... ( -32.20) >DroVir_CAF1 75777 89 + 1 GCU-----CGCCUGGCUGUUUAUUUGCUGUCAUU-UUAGUUGCUUUAAAUUUGCAGCUUAAUGGCAAUUCCACGCUUGGCCACA---------------CACAGCCCUCC ...-----.....((((((........(((((((-..((((((.........)))))).)))))))...(((....))).....---------------.)))))).... ( -23.90) >DroPse_CAF1 72809 103 + 1 CUCCCAUG-CCCUGGCUGUUUAUUUGUUGCCAUUUUUAGUUGGCUUAAAGCUGCAGCUUAAUGGCAAUUCUCCGCUUGGCCACCCGCUCGGGCAG----CAGCC--CUUU ........-....(((((((.....(((((((((...(((((((.....))..))))).))))))))).....(((((((.....)).)))))))----)))))--.... ( -34.00) >DroSec_CAF1 46045 100 + 1 --U-----CGGUUGCCUGUUUAUUUGUUGCCAUUUUUAGUUGCUUUAAACUUGCAGCUUAAUAGCAAUUCUCCGCUUGGCCACC-ACUUGGACGGCAGGCAAGC--CUUU --.-----.(((((((((((.....(((((.(((...((((((.........)))))).))).)))))..((((..(((...))-)..)))).))))))).)))--)... ( -32.20) >DroMoj_CAF1 69281 87 + 1 GCU-----AGCCUGACUGUUUAUUUGCUGUCAUU-UUAGUUGCUUUAAAUUUGCAGCUUAAUGGCAAUUCUACGCUUGACCACA---------------CACGC--CUCC ...-----.(((((((.((......)).))))..-..((((((.........))))))....)))........((.((......---------------)).))--.... ( -16.90) >DroPer_CAF1 65720 103 + 1 CUCCCAUG-CCCUGGCUGUUUAUUUGUUGCCAUUUUUAGUUGGCUUAAAGCUGCAGCUUAAUGGCAAUUCUCCGCUUGGCCACCCGCUCGGGCAG----CAGCC--CUUU ........-....(((((((.....(((((((((...(((((((.....))..))))).))))))))).....(((((((.....)).)))))))----)))))--.... ( -34.00) >consensus CCU_____CGCCUGGCUGUUUAUUUGUUGCCAUUUUUAGUUGCUUUAAACUUGCAGCUUAAUGGCAAUUCUCCGCUUGGCCACC__CU_GG_C_G____CAAGC__CUUU .................((......(((((((((...((((((.........)))))).))))))))).....))................................... (-12.65 = -13.43 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:39 2006