Locus 8315

Sequence ID 3R_DroMel_CAF1
Location 22,201,457 – 22,201,549
Length 92
Max. P 0.832678
window13406

overview

Window 6

Location 22,201,457 – 22,201,549
Length 92
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 84.89
Mean single sequence MFE -19.09
Consensus MFE -15.53
Energy contribution -16.16
Covariance contribution 0.63
Combinations/Pair 1.08
Mean z-score -1.84
Structure conservation index 0.81
SVM decision value 0.72
SVM RNA-class probability 0.832678
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22201457 92 + 27905053
AUAUAGUUGUUUAUAGCUUAUAAUAAAUACAUA----UAUCGCAUCAACAUUUUUUUCUCUGCACUCACACUGGAGCAAAGAGUAUCGACAGCUUU
....(((((((.(((((.((((.........))----))..))..............((((...(((......)))...))))))).))))))).. ( -13.80)
>DroSec_CAF1 45875 88 + 1
--AAAGUUGUUUAUAGCUUAUAAUAAAUAUA------UAUUGCUUCAAAAUUUAUUUCUCUGCACUAACACUGGAGCGGAGAGUAUCGACAGCUUU
--(((((((((.(((((.((((.......))------))..))............((((((((.(((....))).))))))))))).))))))))) ( -21.90)
>DroSim_CAF1 44755 88 + 1
--AAAGUUGUUUAUAGCUUAUAAUAAAUACA------UAUUGCACCAAAAUUUAUUUCUCUGCACUAACACUGGAGCGGAGAGUAUCGACAGCUUU
--(((((((((.(((((..............------....))............((((((((.(((....))).))))))))))).))))))))) ( -21.17)
>DroYak_CAF1 52186 94 + 1
--AAAGUUGUGUAUAGUUAAUAAUAAAUAUGUACGAGUAUCGCAUCGAGAUUUAUUUCUGUGCACUAACAGAGGAGCGGAGAGUAUCGACAGCUUU
--(((((((((((((.(((....)))...)))))..............(((...(((((((...((.....))..)))))))..))).)))))))) ( -19.50)
>consensus
__AAAGUUGUUUAUAGCUUAUAAUAAAUACA______UAUCGCAUCAAAAUUUAUUUCUCUGCACUAACACUGGAGCGGAGAGUAUCGACAGCUUU
..(((((((((.(((((........................))............((((((((.((......)).))))))))))).))))))))) (-15.53 = -16.16 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:38 2006