| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,195,783 – 22,195,927 |
| Length | 144 |
| Max. P | 0.766321 |
| Location | 22,195,783 – 22,195,897 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.05 |
| Mean single sequence MFE | -27.18 |
| Consensus MFE | -15.60 |
| Energy contribution | -15.47 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.740977 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22195783 114 - 27905053 AAAAAGCA-AAGCUGCUGCGUUAUGCUUGCGAUUCAUUUUGCUUCACUCAUAAAUGAAAAUGGCAGGCAAUCACCUGCAGCUAUUUUCCAAUCAGCCGGCGACGAUUUUC-----CAUCC ........-.((((((.(.((..(((((((.((((((((............))))))..)).)))))))...))).))))))..............((....))......-----..... ( -26.80) >DroPse_CAF1 67380 117 - 1 CAAACACAGAAUCUGCUGCGCUUUGCUAUCGUUUUG---UAUUUUGCUCAUAAAUGAAAAUGGCAAGCAAUCACCUGCAGCCAUUUUCCAAUCAACCUGCGUAGCUUUUCUACAUCAUCC .......((((...(((((((...((..........---......))........(((((((((..(((......))).)))))))))..........)))))))..))))......... ( -29.29) >DroSec_CAF1 40267 114 - 1 AAAAAGCA-AAGCUGCUGCGUUAUGCUUGCGAUUCACUUUGCUUCACUCAUAAAUGAAAAUGGCAGGCAAUCACCUGCAGCUAUUUUCCAAUCAGCCAGCGACGAUUUUC-----CAUCC ........-..(((((((..(((((...((((......))))......)))))..(((((((((..(((......))).)))))))))....))).))))..........-----..... ( -26.20) >DroYak_CAF1 46842 112 - 1 A-AGCACA-A-ACUGCUGCGUUAUGCUUGCGAUUCAUUUUGCUUCACUCAUAAAUGAAAAAGGCAGGCAAUCACCUGCAGCUAUUUUCCAAUCAGCCGGCGACGAUUUUC-----CAUCC .-((((..-.-..)))).((((..(((.((..(((((((............)))))))....(((((......)))))................)).)))))))......-----..... ( -23.00) >DroAna_CAF1 73339 113 - 1 GACAAACA-ACACGGUGGGGUUGUGUAUUCAAUUCGU-UUGUUUGGCGCAUAAAUGAAAAUGGCAAGCAAUCACCUGCAGCCAUUUUCCAAUCAACCUACGACGCUUUUC-----CAUCC ........-....(((((((..((((........(((-(.....)))).......(((((((((..(((......))).))))))))).............))))..)))-----)))). ( -28.50) >DroPer_CAF1 60180 117 - 1 CAAACACAGAAUCUGCUGCGCUUUGCUAUCGUUUUG---UAUUUUGCUCAUAAAUGAAAAUGGCAAGCAAUCACCUGCAGCCAUUUUCCAAUCAACCUGCGUAGCUUUUCUACAUCAUCC .......((((...(((((((...((..........---......))........(((((((((..(((......))).)))))))))..........)))))))..))))......... ( -29.29) >consensus AAAAAACA_AAACUGCUGCGUUAUGCUUGCGAUUCAU_UUGCUUCACUCAUAAAUGAAAAUGGCAAGCAAUCACCUGCAGCCAUUUUCCAAUCAACCUGCGACGAUUUUC_____CAUCC ..............((((.(((.((....))........................(((((((((..(((......))).))))))))).....))))))).................... (-15.60 = -15.47 + -0.14)
| Location | 22,195,818 – 22,195,927 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 82.54 |
| Mean single sequence MFE | -25.08 |
| Consensus MFE | -17.21 |
| Energy contribution | -18.97 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.766321 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22195818 109 - 27905053 AUGUUA-------ACAAAAAAAAAAAAAAA-GAGUGAAAAAAAGCA-AAGCUGCUGCGUUAUGCUUGCGAUUCAUUUUGCUUCACUCAUAAAUGAAAAUGGCAGGCAAUCACCUGCAG ......-------.................-(((((((...(((((-.(((......))).)))))((((......))))))))))).............(((((......))))).. ( -27.50) >DroPse_CAF1 67420 108 - 1 AUGGAAACACCAGACAUAC-------AUACAGAUUUGACAAACACAGAAUCUGCUGCGCUUUGCUAUCGUUUUG---UAUUUUGCUCAUAAAUGAAAAUGGCAAGCAAUCACCUGCAG .((....))..........-------...(((((((..........)))))))(((((..(((((.(((((((.---(((((.......))))))))))))..))))).....))))) ( -20.30) >DroSec_CAF1 40302 102 - 1 AUGUCA-------ACAUAA-------AAAC-GAGUGGAAAAAAGCA-AAGCUGCUGCGUUAUGCUUGCGAUUCACUUUGCUUCACUCAUAAAUGAAAAUGGCAGGCAAUCACCUGCAG ......-------......-------....-(((((((...(((((-.(((......))).)))))((((......))))))))))).............(((((......))))).. ( -27.10) >DroSim_CAF1 39206 102 - 1 AUGUCA-------ACAUAA-------AAAC-GAGUGGAAAAAAGCA-AAGUUGCUGCGUUAUGCUUGCGAUUCAUUUUGCUUCACUCAUAAAUGAAAAUGGCAGGCAAUCACCUGCAG ......-------......-------....-((((((.....((((-(((((((.((.....))..)))))....)))))))))))).............(((((......))))).. ( -25.60) >DroEre_CAF1 54599 101 - 1 AUGUCA-------ACAUAA-------AAAU-GAGUGAAA-AAAGCA-AAGCUGCUGCGUUAUGCUUGCGAUUCAUUUUGCUUCACUCAUAAAUGAAAAAGGCAGGCAAUCACCUGCAG ......-------......-------..((-(((((((.-.(((((-.(((......))).)))))((((......)))))))))))))...........(((((......))))).. ( -29.30) >DroYak_CAF1 46877 100 - 1 AUGUCA-------ACAUAA-------AAAC-GAGAGGAA-AGCACA-A-ACUGCUGCGUUAUGCUUGCGAUUCAUUUUGCUUCACUCAUAAAUGAAAAAGGCAGGCAAUCACCUGCAG ......-------......-------....-..(((..(-((((.(-(-(.((...(((.......)))...))))))))))..))).............(((((......))))).. ( -20.70) >consensus AUGUCA_______ACAUAA_______AAAC_GAGUGGAAAAAAGCA_AAGCUGCUGCGUUAUGCUUGCGAUUCAUUUUGCUUCACUCAUAAAUGAAAAUGGCAGGCAAUCACCUGCAG ...............................(((((((...(((((...((....))....)))))((((......))))))))))).............(((((......))))).. (-17.21 = -18.97 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:37 2006