Locus 8313

Sequence ID 3R_DroMel_CAF1
Location 22,194,871 – 22,194,965
Length 94
Max. P 0.962596
window13403

overview

Window 3

Location 22,194,871 – 22,194,965
Length 94
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 95.19
Mean single sequence MFE -25.72
Consensus MFE -22.99
Energy contribution -23.22
Covariance contribution 0.22
Combinations/Pair 1.07
Mean z-score -1.81
Structure conservation index 0.89
SVM decision value 1.54
SVM RNA-class probability 0.962596
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22194871 94 + 27905053
UUC-CACUGACCACGUGCAUGAUUAUGUGGGCUGCCAUUGAUUGUAUGCUCAUUGAAUUAUGCAAAUGUUGCAUGGCCUUACAGCAAAUUGUCAA
...-...((((((..(((((((((..(((((((((........))).))))))..)))))))))..))((((.((......))))))...)))). ( -27.10)
>DroSec_CAF1 39362 94 + 1
UUC-CACUGACCACGUGCAUGAUUAUGUGGGCUGCCAUUGAUUGUAUGCUCAUUGAAUUAUGCAAAUGUUGCAUGGCCUUACAGGAAAUUGUCAA
(((-(..((..((..(((((((((..(((((((((........))).))))))..)))))))))..))...))((......))))))........ ( -23.60)
>DroSim_CAF1 38266 94 + 1
UUC-CACUGACCACGUGCAUGAUUAUGUGGGCUGCCAUUGAUUGUAUGCUCAUUGAAUUAUGCAAAUGUUGCAUGGCCUUACAGGAAAUUGUCAA
(((-(..((..((..(((((((((..(((((((((........))).))))))..)))))))))..))...))((......))))))........ ( -23.60)
>DroEre_CAF1 53630 94 + 1
UUU-CCCUGACCACGUGCAUGAUUAUGUGGGCUGCCAUUGAUUGUAUGCUCAUUGAAUUAUGCAAAUGUUGCAUGGCCUUACAGCAAAUUGUCAA
...-...((((((..(((((((((..(((((((((........))).))))))..)))))))))..))((((.((......))))))...)))). ( -27.10)
>DroYak_CAF1 45937 95 + 1
UUUGCACUGACCACGUGCAUGAUUAUGUGGGCUGCCAUUGAUUGUAUGCUCAUUGAAUUAUGCAAAUGUUGCAUGGCCUUAUAGCAAAUUGUCAA
.......((((((..(((((((((..(((((((((........))).))))))..)))))))))..))((((...........))))...)))). ( -24.60)
>DroAna_CAF1 72503 93 + 1
CGG-CUCUGGCCACGUGCAUGAUUAUGUG-GCUGGCAUUGAUUGUAUGCUCAUUGAAUUAUGCAAAUGUUGCAUGACCUUACAGCAAAUUGUCAA
..(-((..(((((((((......))))))-)))))).(((((.((.((((.......(((((((.....)))))))......)))).)).))))) ( -28.32)
>consensus
UUC_CACUGACCACGUGCAUGAUUAUGUGGGCUGCCAUUGAUUGUAUGCUCAUUGAAUUAUGCAAAUGUUGCAUGGCCUUACAGCAAAUUGUCAA
.......((((((..(((((((((..((((((...((.....))...))))))..)))))))))..))((((.((......))))))...)))). (-22.99 = -23.22 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:35 2006