| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,193,883 – 22,193,988 |
| Length | 105 |
| Max. P | 0.929074 |
| Location | 22,193,883 – 22,193,988 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 78.02 |
| Mean single sequence MFE | -27.68 |
| Consensus MFE | -20.05 |
| Energy contribution | -20.00 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.72 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.929074 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22193883 105 - 27905053 GAGCGG-AUGGGCAACUAAUUUAUAUGG----UGGUGGAGGGAAAUGAGGGCAGGGCAACCUGCUCGUUAAUUCGCAGCGUGAAAACUAAAGUGCAAAGUAUGUGGAAAG ......-.(((....))).(((((((((----(.(((((..((.....(((((((....))))))).))..))))).))((....))............))))))))... ( -29.70) >DroGri_CAF1 59020 100 - 1 --GCGA-G-UGGCAACUAAUUUAUAUUGG----AGCA--UGUCAGCGUGGGCGGGGAAACCUGCUCGUUAAUUCGCAACAUGAAAACUAAAGUGGAAAGUAUGUGGAACA --((((-(-((((..(((((....)))))----.((.--.....))..(((((((....)))))))))).)))))).(((((...((....))......)))))...... ( -29.80) >DroSec_CAF1 38392 105 - 1 GAGCGG-AUGGGCAACUAAUUUAUAUGU----GGGUGGAAGGAAACGAGGACAGGGCAACCUGCUCGUUAAUUCGCUGCGUGAAAACUAAAGUGCAAAGUAUGCGGAAAG ..(((.-((..(((..((.(((.((((.----.(.((((....((((((..((((....))))))))))..)))))..)))).))).))...)))...)).)))...... ( -28.90) >DroEre_CAF1 52649 102 - 1 GAGCGG-CUGGGCAACUAAUUUAUAUGGUCGAAGG-------AGCGGAGGGUUGGGCAGCCUGCUCGUUAAUUCGCAGCAUGAAAACUAAAGUGCAAAGUAUGUGGAAAG ((((((-(((..(((((........((.((....)-------).))...)))))..))))).)))).....((((((((((..........))))......))))))... ( -30.30) >DroAna_CAF1 71454 91 - 1 GGGCGG-AUGGGCAACUAAUUUAUAUUG------------------GGGGGUGGGGCCACCGGCUCGUUAAUUCGCAGCAUGGAAACUAAAGUGCAAAGUAUGUGAAAAG ..((((-((..((..(((((....))))------------------).((((.((....)).))))))..)))))).(((((....)....))))............... ( -26.10) >DroPer_CAF1 58415 96 - 1 GGGCGGUGUGGGCAACUAAUUUAUAUCG-----GGUG---------GGAGGCGGGGCGACCUGCUCGUUAAUUCGCAACAUGAAAACUAAAGUGCAAAGUAUGUGGAAAG ...((((((((....)).....))))))-----..((---------(..((((((....))))))..))).((((((((.((...((....)).))..)).))))))... ( -21.30) >consensus GAGCGG_AUGGGCAACUAAUUUAUAUGG_____GGUG_____AA__GAGGGCGGGGCAACCUGCUCGUUAAUUCGCAGCAUGAAAACUAAAGUGCAAAGUAUGUGGAAAG ..((((..(((....)))..............................(((((((....)))))))......)))).(((((...((....))......)))))...... (-20.05 = -20.00 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:34 2006