Locus 8311

Sequence ID 3R_DroMel_CAF1
Location 22,193,390 – 22,193,483
Length 93
Max. P 0.863678
window13401

overview

Window 1

Location 22,193,390 – 22,193,483
Length 93
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 77.25
Mean single sequence MFE -20.60
Consensus MFE -15.36
Energy contribution -15.17
Covariance contribution -0.19
Combinations/Pair 1.14
Mean z-score -1.35
Structure conservation index 0.75
SVM decision value 0.84
SVM RNA-class probability 0.863678
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22193390 93 - 27905053
AAUUUUUGAUUACAUUUUAAUAAUCAAAAGUUUUGUAAGUGGCUGGC---------ACACGUCCCUUGCAUUCAUCGGUCGUUGAUGCAUG-UAUUUC-AUUGG
((((((((((((........)))))))))))).((((((.((.((..---------...)).))))))))..(((((.....)))))....-......-..... ( -18.20)
>DroPse_CAF1 65005 101 - 1
AAUUUUUGAUUACAUUUUAAUAAUCAAAAGUUUUGUAAGUGGCUGUCCUCGC--UGGCACGUCCUUUACAUCCUUCGUAUGAUGAAGUUUU-UUGUCCGGCUGA
((((((((((((........)))))))))))).((((((.(((((((.....--.)))).))).))))))..((((((...))))))....-............ ( -20.50)
>DroEre_CAF1 52149 92 - 1
AAUUUUUGAUUACAUUUUAAUAAUCAAAAGUUUUGUAAGUGGCUGCC---------ACACGUCCCUUGCAUUCAUCGUCCGUUGAUGUAU--GUAUUC-AUUGG
((((((((((((........))))))))))))......((((...))---------)).((.....(((((.(((((.....))))).))--)))...-..)). ( -20.10)
>DroYak_CAF1 44437 93 - 1
AAUUUUUGAUUACAUUUUGAUAAUCAAAAGUUUUGUAAGUGGCUGGC---------ACACGUCCCUUGCAUUCAUCGUCCGUUGAUGCAUG-GUAUUC-AUUGA
(((((((((((((.....).)))))))))))).((((((.((.((..---------...)).)))))))).((((((((....)))).)))-).....-..... ( -20.40)
>DroAna_CAF1 70910 98 - 1
AAUUUUUGAUUACAUUUUAAUAAUCAAAAGUUUUGUAAGUGCCUGUCCUCGCGACGGCACGUCCUUCACAUCCGACUAC-----AUGCUGGAGUUUUA-AUUUU
((((((((((((........))))))))))))......(((((.(((.....))))))))...((((((((........-----))).))))).....-..... ( -22.90)
>DroPer_CAF1 57797 101 - 1
AAUUUUUGAUUACAUUUUAAUAAUCAAAAGUUUUGUAAGUGGCUGUCCUCGC--UGGCACGUCCUUUACAUCCUUCGUAUGAUGAAGUUUU-UUGUCCUGCUGA
((((((((((((........)))))))))))).((((((.(((((((.....--.)))).))).))))))......(((.((..((....)-)..)).)))... ( -21.50)
>consensus
AAUUUUUGAUUACAUUUUAAUAAUCAAAAGUUUUGUAAGUGGCUGUC_________ACACGUCCCUUACAUCCAUCGUCCGUUGAUGCAUG_GUAUUC_AUUGA
((((((((((((........)))))))))))).((((((.(((((............)).))).))))))..(((((.....)))))................. (-15.36 = -15.17 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:33 2006