Locus 8310

Sequence ID 3R_DroMel_CAF1
Location 22,193,148 – 22,193,254
Length 106
Max. P 0.552415
window13400

overview

Window 0

Location 22,193,148 – 22,193,254
Length 106
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 79.14
Mean single sequence MFE -21.15
Consensus MFE -13.16
Energy contribution -13.88
Covariance contribution 0.72
Combinations/Pair 1.12
Mean z-score -1.42
Structure conservation index 0.62
SVM decision value 0.04
SVM RNA-class probability 0.552415
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22193148 106 - 27905053
GCAUUUAAAAAUGGCAUUAAAAUCAUUAUUAAUGCAUGUGAUGCAAGGGCAGUUUUAUAAGCUGUUCGCGUGGUAAGGGUAUAUGCGGAGCAUAUAGAAUUAAAGU
(((((........(((((((........)))))))....)))))......(((((((((.(((..(((((((.........)))))))))).)))))))))..... ( -25.60)
>DroSec_CAF1 37677 85 - 1
GCAUUUAAAAAUGGCAUUAAAAUCAUUAUUAAUGCAUGUGAUGCAAGGGCAGUUUUAUUAGCUGUUCGCGUGGUAAGGGUAUAUU---------------------
(((((........(((((((........)))))))....)))))..((((((((.....))))))))..................--------------------- ( -19.30)
>DroSim_CAF1 36578 106 - 1
GCAUUUAAAAAUGGCAUUAAAAUCAUUAUUAAUGCAUGUGAUGCAAGGGCAGUUUUAUAAGCUGUUCGCGUGGCAAGGGUAUAUGCGGAGCAUAAAGAAUUAAAGU
((((.((......(((((((........))))))).(((.((((..((((((((.....)))))))))))).)))....)).)))).................... ( -25.60)
>DroEre_CAF1 51910 104 - 1
GCAUUUAAAAAUGGCAUUAAAAUCGUUAUUAAUGCAUGUGAAGCAAGGGCAGUUUUAUAAGCUGUU-GCAAGGUAAGGGUAUAUGCGGAGCAUAAAGAAUUUAAC-
((((.((......(((((((........))))))).......((((.(((..........))).))-))..........)).))))...................- ( -19.30)
>DroYak_CAF1 44193 106 - 1
GCAUUUAAAAAUGGCAUUAAAAUCGUUAUUAAUGCAUGUGAAGCAAGGGCAGUUUUAUAAGCUGUUCGCAAGGAAAGGGUAUAUGCGGAUAAUAUAGAAUUUAAGU
.((((....))))((.(((((.((..(((((.((((((((...(..((((((((.....)))))))).....)......))))))))..)))))..)).))))))) ( -20.00)
>DroAna_CAF1 70661 94 - 1
GCAUUUAAAAACGGCAUUAAAACCAUUAAAAAUCCAUGAGAAACGGCAGCAGUUUGAUAAGCUGCUCGAA-CGAAAGUGUAUAAAUUGGGUA-----AGU------
............((........)).......(((((.......(((((((..........))))).)).(-(....))........))))).-----...------ ( -17.10)
>consensus
GCAUUUAAAAAUGGCAUUAAAAUCAUUAUUAAUGCAUGUGAAGCAAGGGCAGUUUUAUAAGCUGUUCGCAUGGUAAGGGUAUAUGCGGAGCAUA_AGAAUU_AAG_
((...........(((((((........)))))))...........((((((((.....))))))))))..................................... (-13.16 = -13.88 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:32 2006