Locus 831

Sequence ID 3R_DroMel_CAF1
Location 2,859,774 – 2,859,864
Length 90
Max. P 0.556942
window1318

overview

Window 8

Location 2,859,774 – 2,859,864
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 86.59
Mean single sequence MFE -28.18
Consensus MFE -21.21
Energy contribution -23.02
Covariance contribution 1.81
Combinations/Pair 1.17
Mean z-score -2.42
Structure conservation index 0.75
SVM decision value 0.05
SVM RNA-class probability 0.556942
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2859774 90 + 27905053
AGCAGGCUUAAGUAUCUCACAGAUACUUUCGCAUCCAAGGCGCUGCGGUGGGGCAAUUAAAAGCCCAUACGCAAUGGACAAACCGUCUUG
.....((..(((((((.....)))))))..))...((((((..((((...((((........))))...))))..((.....)))))))) ( -31.70)
>DroSec_CAF1 134776 90 + 1
AGCAGGCUUAAGUAUCUCACAGAUACUUUCGCAUCCAAGGCGCCGCGGUGGGGCAAUUAAAAGCCCAUACGCGAUGGACAAACCGUCUUG
.....((..(((((((.....)))))))..))...((((((..((((...((((........))))...))))..((.....)))))))) ( -33.00)
>DroSim_CAF1 139607 90 + 1
AGCAGGCUUAAGUAUCUCACAGAUACUUUCGCAUCCAAGGCGCUGCGGUGGGGCAAUUAAAAGCCCAUACGCGAUGGACAAACCGUCUUG
.....((..(((((((.....)))))))..))...((((((..((((...((((........))))...))))..((.....)))))))) ( -31.00)
>DroEre_CAF1 137952 90 + 1
AGCAGGCUUAAGUAUCUCUCAGAUACUUUCGCAUCCAAGGCGCUGCGGUGGGGCAAUUAAAAGCCCAUACGCAAUGGACAAACUGUCUUG
.((((((..(((((((.....)))))))..)).((((......((((...((((........))))...)))).))))....)))).... ( -29.80)
>DroYak_CAF1 147585 90 + 1
AGCAGGCUUAAGUAUCUCUCAGAUACUUUCGCAUCCAAGGCGCUGCGGUAGGGCAAUUAAAAGCCCAUACGCAAUGAACAAACCGUCUUG
.....((..(((((((.....)))))))..))...(((((((.((((...((((........))))...))))..........))))))) ( -28.40)
>DroAna_CAF1 128561 70 + 1
AGCAGGCGUAAGUAUCUCUCAGAUAC------AUUCAAGACGCAGCGGUUGGGCAAUUAAGAGCCAAUAU---------AAGCA-----G
.((..((((..(((((.....)))))------.......))))........(((........))).....---------..)).-----. ( -15.20)
>consensus
AGCAGGCUUAAGUAUCUCACAGAUACUUUCGCAUCCAAGGCGCUGCGGUGGGGCAAUUAAAAGCCCAUACGCAAUGGACAAACCGUCUUG
.....((..(((((((.....)))))))..))...(((((((.((((...((((........))))...))))..........))))))) (-21.21 = -23.02 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:09 2006