| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,191,928 – 22,192,024 |
| Length | 96 |
| Max. P | 0.762701 |
| Location | 22,191,928 – 22,192,024 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 79.99 |
| Mean single sequence MFE | -28.20 |
| Consensus MFE | -20.36 |
| Energy contribution | -20.12 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.762701 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22191928 96 - 27905053 AGUCGACGGAUGGAACAACUGCCGCUGGCAUU-UCAUAGAGCCAA-----GCUGUGGGAAUGCUCACAAAAGAGCCAUUAGCAGGGAAUUGGCAGGCACAUA----- .(((.....((((((....((((...))))))-))))...(((((-----.((((...(((((((......))).)))).))))....))))).))).....----- ( -27.00) >DroVir_CAF1 64043 106 - 1 GGUUAAGGGCU-GGUCGACUGUCGUUGGUAUUCUUACUAAGCUAACGGCAAUUGUGGGAGUGCACACAAAAGAGCCAUUAGCAGCGAAUUACCAGAUAAAGGCACAC .(((.....((-(((......(((((((((....))))..(((((.(((..(((((........)))))....))).))))))))))...))))).....))).... ( -29.00) >DroSec_CAF1 36466 96 - 1 AGUCGACGGAUGGAUCAACUGCCGCUGGCAUU-UCAUUGAGCCAA-----GCUGUGGGAAUGCUCACAAAAGAGCCAUUAGCAGGGAAUUGGCAGACACAUA----- .(((....((((((.....((((...)))).)-)))))..(((((-----.((((...(((((((......))).)))).))))....))))).))).....----- ( -27.90) >DroSim_CAF1 35343 96 - 1 AGUCGACGGAUGGAACAACUGCCGCUGGCAUU-UCAUUGAGCCAA-----GCUGUGGGAAUGCUCACAAAAGAGCCAUUAGCAGGGAAUUGGCAGACAUAUA----- .(((....(((((((....((((...))))))-)))))..(((((-----.((((...(((((((......))).)))).))))....))))).))).....----- ( -28.90) >DroYak_CAF1 42962 96 - 1 AGUCGACGGAUGGAACAACUGCCGCUGGCAUU-UCAUUGAGCCAA-----GCUGUGGGAAUGCUCACAAAAGAGCCAUUAGCAGGGAAUUGGCAGACACAUA----- .(((....(((((((....((((...))))))-)))))..(((((-----.((((...(((((((......))).)))).))))....))))).))).....----- ( -28.90) >DroAna_CAF1 69733 81 - 1 AGCU--------------CUGCUGUUGGCAUU-UCAUUGUGCCAA-----GUUGUGGGAAUGCUCACAAAAGAGCCAUUAGCAGGGAAUUGGCAGACACAG------ ..((--------------(((((((((((((.-.....)))))))-----.(((((((....))))))).........))))))))...............------ ( -27.50) >consensus AGUCGACGGAUGGAACAACUGCCGCUGGCAUU_UCAUUGAGCCAA_____GCUGUGGGAAUGCUCACAAAAGAGCCAUUAGCAGGGAAUUGGCAGACACAUA_____ ..................((((((.((((...........)))).......((((...(((((((......))).)))).)))).....))))))............ (-20.36 = -20.12 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:31 2006