| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,181,790 – 22,181,880 |
| Length | 90 |
| Max. P | 0.555987 |
| Location | 22,181,790 – 22,181,880 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 73.27 |
| Mean single sequence MFE | -20.90 |
| Consensus MFE | -12.86 |
| Energy contribution | -13.87 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.555987 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22181790 90 - 27905053 UAUUAUUAUGCAACCCAAGUAUGCUGAGCUUGGAUUGAUGAAAAAGCGAGAUUCGUUUGAAAUAAAUUAUUCAAAUGAAUU----------------CAGUUAUUU .....((((.(((.((((((.......)))))).)))))))...(((..((((((((((((........))))))))))))----------------..))).... ( -23.40) >DroSec_CAF1 26269 106 - 1 UAUUAUUAUGCAACCCAUGUAUGCUGAGCUUGGUUUGAUGAAAAAGCGGGAUUUGUUUGAAAUAAAUAAUUCAAAUGCAUUCAAGUAUUAUAACUUUCAGUUAUUU .......(((((.....)))))(((((((((..((....))..)))).((((.((((((((........)))))))).))))..............)))))..... ( -17.80) >DroEre_CAF1 40479 106 - 1 CAUUAUUAUGCAACACAAGUAGCAUGAGCUUGGAUUGAUAAAAGGGCGGGCCUAGUUUGAGGUAAAUAAAUCAGAUGCAGUCAAGUAUUACUACUUUAAAUGAUGU (((((((((((.((....)).))))))(((((.((((......(((....))).((((((..........)))))).)))))))))..............))))). ( -21.50) >consensus UAUUAUUAUGCAACCCAAGUAUGCUGAGCUUGGAUUGAUGAAAAAGCGGGAUUAGUUUGAAAUAAAUAAUUCAAAUGCAUUCAAGUAUUA__ACUUUCAGUUAUUU .....((((.(((.((((((.......)))))).))))))).......((((.((((((((........)))))))).))))........................ (-12.86 = -13.87 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:27 2006