Locus 8306

Sequence ID 3R_DroMel_CAF1
Location 22,181,655 – 22,181,769
Length 114
Max. P 0.829801
window13394

overview

Window 4

Location 22,181,655 – 22,181,769
Length 114
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.07
Mean single sequence MFE -34.60
Consensus MFE -21.39
Energy contribution -20.17
Covariance contribution -1.22
Combinations/Pair 1.42
Mean z-score -1.77
Structure conservation index 0.62
SVM decision value 0.71
SVM RNA-class probability 0.829801
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22181655 114 + 27905053
CCACAUCCUUCUGGUAUAAUCUACAUGUGAUGCAGUCGCAUCACCUGCACGCCCUCAUCUGGAAAAACUUCUUGUGGAUGAUGCGCAACGUGGGGUGAGU----AACGA--AAUUCUGAA
...((((((..((((((.(((((((.(((((((....)))))))........((......))..........))))))).)))).))....))))))...----.....--......... ( -30.70)
>DroVir_CAF1 46934 112 + 1
CGACAUCCUUCUGGUACAACCUGCAUGUGAUGCAAUCGCAUCACUUGCAUGCGCUCAUCUGGAAAAACUUUCUCUGGAUGAUGCGCAAUGUGGGGUGAGU----AAAUG--G--CUAGCA
...((((((.(.((.....))((((.(((((((....))))))).))))((((((((((..((.........))..))))).)))))..).))))))(((----.....--)--)).... ( -42.90)
>DroWil_CAF1 25950 118 + 1
CCACAUCGUUUUGGUACAAUUUACAUGUGAUGCAAUCGCAUCAUUUACAUGCACUUAUCUGGAAGAACUUUCUGUGGAUGAUGCGCAAUGUGGGGUAAGUUGGCAAUGC--AUUUCUAUU
.......((.(((...((((((((..(((((((....)))))))((((((((.((((((((..(((....))).))))))).).)).)))))).)))))))).))).))--......... ( -31.20)
>DroMoj_CAF1 46533 112 + 1
AAACGUCGUUCUGGUACAAUUUGCAUGUGAUGCAGUCGCAUCAUCUGCAUGCGCUCAUCUGGAAAAACUUUCUGUGGAUGAUACGCAACGUAGGGUAAGU----AAUUG--G--CCCGCA
..((((...............((((.(((((((....))))))).))))((((.((((((((((.....))))..))))))..)))))))).((((((..----..)).--)--)))... ( -34.90)
>DroAna_CAF1 58659 109 + 1
CCACUUCCUUUUGGUACAACCUUCAUGUGAUGCAGUCCCAUCAUCUGCACGCCCUUAUUUGGAAGAACUUCUUGUGGAUGAUGCGCAACGUUGGGUAAGU----GAUU-------CCCAA
.((((((((..(((((..((......))..))).((..(((((((..(....((......))(((.....))))..))))))).))..))..))).))))----)...-------..... ( -27.00)
>DroPer_CAF1 45698 114 + 1
CCGCCUCCUUCUGGUACAACCUGCAUGUGAUGCAAUCGCAUCAUCUGCACGCGCUCAUUUGGAAGAACUUCCUCUGGAUGAUGCGGAAUGUGGGGUAAGU----ACGGGGUA--UAAGAA
..((((((....)((((.(((((((.(((((((....))))))).))).((((.(((((..((.(.....).))..))))))))).......))))..))----))))))).--...... ( -40.90)
>consensus
CCACAUCCUUCUGGUACAACCUGCAUGUGAUGCAAUCGCAUCAUCUGCACGCGCUCAUCUGGAAAAACUUCCUGUGGAUGAUGCGCAACGUGGGGUAAGU____AAUGG__A__UCAGAA
...................(((((..(((((((....))))))).....((((.((((((((((....))))...))))))))))....))))).......................... (-21.39 = -20.17 +  -1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:26 2006