Locus 8304

Sequence ID 3R_DroMel_CAF1
Location 22,179,478 – 22,179,572
Length 94
Max. P 0.880593
window13390

overview

Window 0

Location 22,179,478 – 22,179,572
Length 94
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 85.57
Mean single sequence MFE -25.70
Consensus MFE -22.29
Energy contribution -22.07
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -2.05
Structure conservation index 0.87
SVM decision value 0.91
SVM RNA-class probability 0.880593
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22179478 94 + 27905053
-------------------------ACUGUCCCCAGUUGUA-CAUGCAGCACUUUCUGCUCUAAUAAAUGAAAUCAGGGAGCGUAACAUUAUGUGAUGGAUAUAUUGUUACGAGUGCUCU
-------------------------((((....))))....-.....(((((((...(((((......((....)).)))))((((((.(((((.....))))).))))))))))))).. ( -25.60)
>DroPse_CAF1 42510 92 + 1
-------------------------ACUGUCCCCAGCUGUA-CAUGCAGCACUUUCAGCUCUAAUAAAUGAAAUCAGGGAGCGUAACAUUAUGUGAUGGAUAUAUUGUUACGGAUACG--
-------------------------..(((((...(((((.-...))))).......(((((......((....)).)))))((((((.(((((.....))))).)))))))))))..-- ( -27.20)
>DroSec_CAF1 23997 94 + 1
-------------------------ACUGUCCCCAGUUGUA-CAUGCAGCACUUUCUGCUCUAAUAAAUGAAAUCAGGGAGCGUAACAUUAUGUGAUGGAUAUAUUGUUACGAGUUCUCC
-------------------------.(((....((.((((.-...((((......))))....)))).))....)))(((((((((((.(((((.....))))).)))))))....)))) ( -22.50)
>DroWil_CAF1 22183 120 + 1
UUUCACUCUUUGUAUCUAUUCCUAUUCUGUCCCCAGUUGUACCAUGCAGCACUUUCUGCUCUAAUAAAUGAAAUCAGGGAGCGUAACAUUAUGUGAUGGAUAUAUUGUUACGAGUGCCUC
...(((((....................(..(((.(((((.....)))))..((((.............))))...)))..)((((((.(((((.....))))).))))))))))).... ( -27.32)
>DroAna_CAF1 56750 94 + 1
-------------------------AAUGUCCCAAGUUGUA-CAUGCAGCACUUUCUGCUCUAAUAAAUGAAAUCAGGGAGCGUAACAUUAUGUGAUGGAUAUAUUGUUACGAGUGCUCU
-------------------------.((((.(......).)-)))..(((((((...(((((......((....)).)))))((((((.(((((.....))))).))))))))))))).. ( -24.40)
>DroPer_CAF1 43364 92 + 1
-------------------------ACUGUCCCCAGCUGUA-CAUGCAGCACUUUCAGCUCUAAUAAAUGAAAUCAGGGAGCGUAACAUUAUGUGAUGGAUAUAUUGUUACGGAUACG--
-------------------------..(((((...(((((.-...))))).......(((((......((....)).)))))((((((.(((((.....))))).)))))))))))..-- ( -27.20)
>consensus
_________________________ACUGUCCCCAGUUGUA_CAUGCAGCACUUUCUGCUCUAAUAAAUGAAAUCAGGGAGCGUAACAUUAUGUGAUGGAUAUAUUGUUACGAGUGCUC_
.............................((((..(((((.....)))))..((((.............))))...)))).(((((((.(((((.....))))).)))))))........ (-22.29 = -22.07 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:23 2006