Locus 8303

Sequence ID 3R_DroMel_CAF1
Location 22,173,856 – 22,173,950
Length 94
Max. P 0.559810
window13389

overview

Window 9

Location 22,173,856 – 22,173,950
Length 94
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 88.94
Mean single sequence MFE -24.66
Consensus MFE -18.74
Energy contribution -19.78
Covariance contribution 1.04
Combinations/Pair 1.05
Mean z-score -1.54
Structure conservation index 0.76
SVM decision value 0.05
SVM RNA-class probability 0.559810
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22173856 94 + 27905053
GGAAAAAUGGGGUGGAAAAUGGGCGAU-----------GGAGGGAAAAAGAGGAGCUUUGGGCACUAAGAGAGCGCUCAGAGAAUACCGUGCACCGAGCAAUGAA
..........((((....((((.(...-----------...).............((((((((.((.....)).))))))))....)))).)))).......... ( -19.90)
>DroSec_CAF1 18141 102 + 1
GGGAAAAUGGGGUGGAAAAUGGGCGCUGGCAA---GGCGGAGGGAAAAAGAGGGGUUUUGGGCACUAAGAGAGCGCUCAGAGAAUACCGUGCACCGAGCAAUGAA
..........((((....((((.((((.....---))))................((((((((.((.....)).))))))))....)))).)))).......... ( -23.90)
>DroSim_CAF1 16900 102 + 1
GGGAAAAUGGGGUGGAAAAUGGGCGCUUGCAA---GGCGGAGGGAAACAGAGGGGUUUUGGGCACUAAGAGAGCGCUCAGAGAAUACCGUGCACCGAGCAAUGAA
..........((((.....(((((((((...(---(((...((((..(....)..))))..)).))....))))))))).....)))).(((.....)))..... ( -26.00)
>DroEre_CAF1 29342 102 + 1
GGGAAAAUGGGGUGGAAAAUGGGCGCUGGAAAAUG-GCGAAGGGAAAAUGAGGGGUUUUGGGC--UCAGAGAGCGCUCAGAGAAUACCGUGCACCGAGCAAUGAA
..........((((.....((((((((........-.(....).........((((.....))--))....)))))))).....)))).(((.....)))..... ( -24.20)
>DroYak_CAF1 24228 105 + 1
CGGAAAAUGGGGUGGAAAAUGGGCUCUGGAAACUGGGCGAAGGGAAACGGAGGGGUUUUGGGCACUAAGAGAGCGCUCAGAGAAUACCGUGCACCGAGCAAUGAA
..........((((........((((.(....).))))........((((.....((((((((.((.....)).))))))))....)))).)))).......... ( -29.30)
>consensus
GGGAAAAUGGGGUGGAAAAUGGGCGCUGGAAA___GGCGGAGGGAAAAAGAGGGGUUUUGGGCACUAAGAGAGCGCUCAGAGAAUACCGUGCACCGAGCAAUGAA
..........((((....((((.((((........))))................((((((((.((.....)).))))))))....)))).)))).......... (-18.74 = -19.78 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:22 2006